Factsheet for TraesCS5D01G200900.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G058270.1	Barley	nucleus	98.24	98.59
TraesCS5B01G193200.1	Wheat	nucleus	97.89	97.89
HORVU6Hr1G060220.1	Barley	nucleus	66.55	76.52
KXG35507	Sorghum	nucleus	79.58	74.34
Zm00001d020267_P001	Maize	nucleus	75.7	72.64
TraesCS7D01G469200.1	Wheat	nucleus	33.45	56.89
TraesCS4D01G267500.1	Wheat	nucleus	42.96	43.42
GSMUA_Achr9P12950_001	Banana	nucleus	50.7	42.48
TraesCS6D01G281200.1	Wheat	nucleus	46.13	39.34
TraesCS7D01G182700.1	Wheat	nucleus, plastid	50.0	38.8
CDX73367	Canola	nucleus	39.08	34.58
AT1G36060.1	Thale cress	nucleus	37.68	34.08
Bra040381.1-P	Field mustard	nucleus	38.38	33.96
CDY48227	Canola	nucleus	38.38	33.96
TraesCS7D01G147200.1	Wheat	mitochondrion, nucleus	18.66	32.52
TraesCS7D01G147100.1	Wheat	mitochondrion, nucleus	18.66	32.32
TraesCS2D01G503900.1	Wheat	mitochondrion	17.61	32.05
TraesCS6D01G343800.1	Wheat	mitochondrion	19.01	31.76
TraesCS2D01G503100.1	Wheat	nucleus	15.49	29.33
TraesCS1D01G418900.1	Wheat	plastid	26.06	26.15
TraesCS7D01G372700.1	Wheat	nucleus	16.9	21.15
TraesCS6D01G217800.1	Wheat	nucleus	30.28	18.82
TraesCS2D01G369900.1	Wheat	nucleus	26.76	16.7

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF16	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5D01G200900	EnsemblPlants:TraesCS5D01G200900.2	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:304162641..304163495

Molecular Weight (calculated)

30614.5 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.507

Length

284 amino acids

Sequence
(BLAST)

001: MAAAIDLSGE DLVRALEPFI REASAPPPLH SHLSPTSPFS FPHAAYSGYP YGVQAQAQTE LSPAQMHYIQ ARLHLQRQTG QPGHLGPRPQ PMKPASVAAA
101: TPPRPQKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDQ AAYRLRGDAA RLNFPDNAAS RGPLHASVDA KLQTLCQNIT ASKNGKKSAS
201: VSASTAAATS STPTSNCSSP SSDEASSSLE SAESSPSPAT TTAAEVPEMQ QLDFSEAPWD EAACFALTKY PSYEIDWDSL LATN

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.