Factsheet for GSMUA_Achr9P12950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04360_001	Banana	nucleus	41.59	56.4
TraesCS7D01G469200.1	Wheat	nucleus	25.66	52.1
GSMUA_Achr6P10440_001	Banana	nucleus	39.53	51.34
HORVU5Hr1G058270.1	Barley	nucleus	42.48	50.88
TraesCS5D01G200900.2	Wheat	nucleus	42.48	50.7
GSMUA_AchrUn_...	Banana	nucleus	41.0	50.55
GSMUA_Achr10P...	Banana	nucleus	41.59	50.54
TraesCS5B01G193200.1	Wheat	nucleus	42.18	50.35
Zm00001d020267_P001	Maize	nucleus	43.36	49.66
Os08t0408500-01	Rice	nucleus	40.71	49.29
KXG35507	Sorghum	nucleus	43.66	48.68
EES13814	Sorghum	nucleus	38.64	48.34
Zm00001d032295_P001	Maize	nucleus	37.17	48.09
GSMUA_Achr10P...	Banana	nucleus	41.3	47.62
GSMUA_Achr3P01650_001	Banana	nucleus	45.72	46.97
HORVU6Hr1G060220.1	Barley	nucleus	32.74	44.94
GSMUA_Achr7P19320_001	Banana	nucleus	15.93	35.29
CDX73367	Canola	nucleus	33.33	35.2
AT1G36060.1	Thale cress	nucleus	32.15	34.71
Bra040381.1-P	Field mustard	nucleus	32.74	34.58
CDY48227	Canola	nucleus	32.74	34.58
GSMUA_Achr9P13760_001	Banana	mitochondrion	15.04	33.55
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	15.34	32.3
GSMUA_Achr8P28500_001	Banana	nucleus	24.48	29.86
GSMUA_Achr6P05210_001	Banana	nucleus	15.63	29.12
GSMUA_Achr10P...	Banana	mitochondrion	15.04	28.98
GSMUA_Achr5P09470_001	Banana	nucleus	20.06	27.2
GSMUA_Achr1P27990_001	Banana	nucleus	19.17	26.21
GSMUA_Achr7P10160_001	Banana	nucleus	15.34	25.24
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	14.75	25.13
GSMUA_Achr7P16060_001	Banana	mitochondrion	15.04	21.61
GSMUA_Achr10P...	Banana	nucleus	21.83	21.51
GSMUA_Achr4P02200_001	Banana	mitochondrion	14.75	21.46
GSMUA_Achr4P26080_001	Banana	nucleus	23.6	19.7
GSMUA_Achr8P14110_001	Banana	nucleus	20.94	17.84

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G12950_001	EnsemblPlants:GSMUA_Achr9P12950_001	EnsemblPlants:GSMUA_Achr9T12950_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TZV3	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002960F38	SEG:seg

Description

Putative Ethylene-responsive transcription factor RAP2-4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G12950_001]

Coordinates

chr9:-:8416605..8417954

Molecular Weight (calculated)

36787.8 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.516

Length

339 amino acids

Sequence
(BLAST)

001: MAAAVDMHDG KRVFSADPFC DLMKPLEPSI AGASTSSASS SSNFTNHSFD AYSHQNPTFA FRSHQDPTLY GCSQSPSSAG MVPESFLGLD RQGLVGSVGL
101: THLSPEQIQQ IQAEIQLQQQ LSIVGRQLPP NRHHQHQAAG FLAPRPQAMK HAGSTPPPKT TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA
201: LAYDQAAYRL RGESARLNFP ENRHGAADGG SLHASVDAKL QAICQSLASS SKQGSASGAL LPTDTTNPDS NAATKVAAEG VTSMVEISSD GEDSSGSSPV
301: LEMQQLDFTE VPWDESENFV LKKYPSWEID WDSILSPRT

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.