CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020267_P001	Maize	nucleus	87.5	89.86
TraesCS5D01G200900.2	Wheat	nucleus	74.34	79.58
HORVU5Hr1G058270.1	Barley	nucleus	74.01	79.51
TraesCS5B01G193200.1	Wheat	nucleus	74.01	79.23
HORVU6Hr1G060220.1	Barley	nucleus	54.28	66.8
EES13814	Sorghum	nucleus	53.95	60.52
GSMUA_Achr9P12950_001	Banana	nucleus	48.68	43.66
EES07235	Sorghum	nucleus	46.05	42.3
EER92713	Sorghum	nucleus	41.45	39.75
EER89448	Sorghum	nucleus	46.05	38.15
CDX73367	Canola	nucleus	38.16	36.14
Bra040381.1-P	Field mustard	nucleus	37.83	35.83
CDY48227	Canola	nucleus	37.83	35.83
AT1G36060.1	Thale cress	nucleus	36.51	35.35
OQU85888	Sorghum	mitochondrion	17.11	33.55
EES12999	Sorghum	mitochondrion	16.45	29.07
EER87969	Sorghum	mitochondrion	16.78	28.18
EES19973	Sorghum	plastid	24.01	24.17
KXG29745	Sorghum	nucleus	15.79	22.54
EER90018	Sorghum	nucleus	15.79	20.43
KXG26694	Sorghum	nucleus	27.96	18.4
OQU85375	Sorghum	nucleus	27.63	17.95

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	UniProt:A0A1B6QC62	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KXG35507	ProteinID:KXG35507	ProteinID:KXG35507.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF16	SMART:SM00380	EnsemblPlantsGene:SORBI_3002G184400	SUPFAM:SSF54171	UniParc:UPI00081AE412
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:56790727..56793846

Molecular Weight (calculated)

32153.2 Da

IEP (calculated)

7.306

GRAVY (calculated)

-0.432

Length

304 amino acids

Sequence
(BLAST)

001: MAAAIDLSGE ELMRALEPFI RDASSAPHGS SPLLHPHHQP LSPSSPFSFH HAAAYGGYPF AAAAAEGAGQ LSPAQMQYIQ ARLHLQRQSQ QSSVLGPRAQ
101: PMKASAAAAP TPPRPQKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDQ AAYRLRGDAA RLNFPDNAAS RGPLHASVDA KLQTLCQNIA
201: ASKKGAKKHA SASAAAAAAT SSSAPTSNCS SSPSSDDASS SCCLESAAES SCPSPSPSAS PESSTVPEMQ QLDFSEAPWD EAAGFALTKY PSYEIDWDSL
301: LAAN

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.