CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044857_P001	Maize	nucleus	82.83	87.11
HORVU7Hr1G037180.1	Barley	nucleus, plastid	68.39	67.66
TraesCS7D01G182700.1	Wheat	nucleus, plastid	67.03	67.21
TraesCS7A01G180900.1	Wheat	nucleus, plastid	66.21	67.13
TraesCS7B01G085900.1	Wheat	nucleus, plastid	66.76	66.58
EES07235	Sorghum	nucleus	57.49	63.75
GSMUA_Achr3P04360_001	Banana	nucleus	35.15	51.6
EES13814	Sorghum	nucleus	35.15	47.6
KXG35507	Sorghum	nucleus	38.15	46.05
EER92713	Sorghum	nucleus	36.78	42.59
AT1G36060.1	Thale cress	nucleus	32.7	38.22
CDX73367	Canola	nucleus	32.97	37.69
CDY48227	Canola	nucleus	32.7	37.38
Bra040381.1-P	Field mustard	nucleus	32.7	37.38
OQU85888	Sorghum	mitochondrion	12.53	29.68
EES12999	Sorghum	mitochondrion	12.81	27.33
EER87969	Sorghum	mitochondrion	13.08	26.52
EES19973	Sorghum	plastid	19.62	23.84
KXG29745	Sorghum	nucleus	13.35	23.0
EER90018	Sorghum	nucleus	13.35	20.85
KXG26694	Sorghum	nucleus	24.8	19.7
OQU85375	Sorghum	nucleus	24.8	19.44

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EntrezGene:8080057	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5Z6Z4
InterPro:DNA-bd_dom_sf	EnsemblPlants:EER89448	ProteinID:EER89448	ProteinID:EER89448.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	ProteinID:KXG19628.2	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF21	SMART:SM00380	EnsemblPlantsGene:SORBI_3010G089700
SUPFAM:SSF54171	unigene:Sbi.1357	UniParc:UPI0001A89890	RefSeq:XP_002438081.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:7785992..7790247

Molecular Weight (calculated)

38777.7 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.395

Length

367 amino acids

Sequence
(BLAST)

001: MAAIDLYTNQ LSSSSSSSSD QELMKALEPF IRSASSPTSS TSTTTSPFSY SYPYCSALPQ DSYYLPATSS YTSFPPPPPA PTAATSFSQL PPLPQSSSSY
101: ASPAAASYPT SSSADAASGL AALNHLGPAA QIHQIQAQLL AQHQEQQQQQ RGLLAAAAFL GPRATQPMKH AGAPSASSAK LFRGVRQRHW GKWVAEIRLP
201: RNRTRLWLGT FDSAEDAALA YDKAAFRLRG DAARLNFPSL RRGGVHLAGP LDASVDAKLT AICQGLTTAE PASSKAADTD ASTTATAAPD SPKASASTTT
301: TEGDESVHSA GSPPSSLPAF FQPPPPPQQQ HPEMVSLDFT EAPWDESAAL HLNKYPSWEI DWDSILS

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.