CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048208_P001	Maize	nucleus	84.23	89.9
Zm00001d028017_P001	Maize	nucleus	82.97	87.67
Os03t0191900-01	Rice	nucleus	66.56	71.04
TraesCS4B01G268100.1	Wheat	nucleus	57.73	69.32
TraesCS4A01G035400.2	Wheat	nucleus	60.88	68.68
TraesCS4D01G267500.1	Wheat	nucleus	59.94	67.62
HORVU4Hr1G071890.3	Barley	nucleus	47.0	53.99
EES13814	Sorghum	nucleus	37.54	43.91
GSMUA_Achr3P04360_001	Banana	nucleus	33.12	42.0
KXG35507	Sorghum	nucleus	39.75	41.45
EES07235	Sorghum	nucleus	43.22	41.39
EER89448	Sorghum	nucleus	42.59	36.78
AT1G36060.1	Thale cress	nucleus	36.28	36.62
CDX73367	Canola	nucleus	35.65	35.2
Bra040381.1-P	Field mustard	nucleus	35.02	34.58
CDY48227	Canola	nucleus	35.02	34.58
OQU85888	Sorghum	mitochondrion	16.72	34.19
EER87969	Sorghum	mitochondrion	17.35	30.39
EES12999	Sorghum	mitochondrion	16.4	30.23
EES19973	Sorghum	plastid	23.97	25.17
KXG29745	Sorghum	nucleus	16.09	23.94
EER90018	Sorghum	nucleus	16.09	21.7
KXG26694	Sorghum	nucleus	25.55	17.53
OQU85375	Sorghum	nucleus	25.55	17.31

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EntrezGene:8081902	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5WUS4
InterPro:DNA-bd_dom_sf	EnsemblPlants:EER92713	ProteinID:EER92713	ProteinID:EER92713.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF18	SMART:SM00380	EnsemblPlantsGene:SORBI_3001G473900	SUPFAM:SSF54171
unigene:Sbi.9468	UniParc:UPI0001A8295C	RefSeq:XP_002465715.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:74602207..74603597

Molecular Weight (calculated)

33747.5 Da

IEP (calculated)

7.669

GRAVY (calculated)

-0.314

Length

317 amino acids

Sequence
(BLAST)

001: MAATTIDWHG RNAALYGVAD RDSKELVRAL APPMQQAAPT ISFAYPCSGV EQQSAAAAAG SFLGAGGSSG LLTPAQILQL QSRLQFLRRP AAGGATLAAV
101: TTQQMKRQGV PQAPAPLTSR PAVSKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE EAALAYDSAA FRLRGDSARL NFPELRRGGQ HLGPPLHAAV
201: DAKLHAICNG TTDVVVPLPQ SQSQSQSQSQ SHATTATATT TPSSLSSASP HVKSEPGCSG SESSFSADGD VSSTGSSDVV PEMQLLDFSE APWDESESFH
301: LRKYPSLEID WDSILIS

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.