Factsheet for TraesCS4D01G267500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G268100.1	Wheat	nucleus	90.75	96.59
TraesCS4A01G035400.2	Wheat	nucleus	94.66	94.66
Os03t0191900-01	Rice	nucleus	70.82	67.0
Zm00001d048208_P001	Maize	nucleus	67.26	63.64
HORVU4Hr1G071890.3	Barley	nucleus	62.28	63.41
Zm00001d028017_P001	Maize	nucleus	66.55	62.33
EER92713	Sorghum	nucleus	67.62	59.94
TraesCS7D01G469200.1	Wheat	nucleus	27.4	46.11
TraesCS5D01G200900.2	Wheat	nucleus	43.42	42.96
GSMUA_Achr3P04360_001	Banana	nucleus	37.01	41.6
TraesCS6D01G281200.1	Wheat	nucleus	44.48	37.54
AT1G36060.1	Thale cress	nucleus	38.79	34.71
CDX73367	Canola	nucleus	38.79	33.96
Bra040381.1-P	Field mustard	nucleus	38.43	33.64
CDY48227	Canola	nucleus	38.43	33.64
TraesCS7D01G182700.1	Wheat	nucleus, plastid	43.06	33.06
TraesCS7D01G147200.1	Wheat	mitochondrion, nucleus	18.15	31.29
TraesCS7D01G147100.1	Wheat	mitochondrion, nucleus	18.15	31.1
TraesCS6D01G343800.1	Wheat	mitochondrion	18.51	30.59
TraesCS2D01G503900.1	Wheat	mitochondrion	16.73	30.13
TraesCS2D01G503100.1	Wheat	nucleus	15.66	29.33
TraesCS1D01G418900.1	Wheat	plastid	25.98	25.8
TraesCS7D01G372700.1	Wheat	nucleus	17.79	22.03
TraesCS6D01G217800.1	Wheat	nucleus	30.61	18.82
TraesCS2D01G369900.1	Wheat	nucleus	30.25	18.68

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF18	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4D01G267500	EnsemblPlants:TraesCS4D01G267500.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:438153023..438153868

Molecular Weight (calculated)

30793.5 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.364

Length

281 amino acids

Sequence
(BLAST)

001: MATTVDWRSY RPDLPAAMYR MVDSRDQVMH AFAPPTAQGA APTISFAFPC PGADQSAGLL RGATYLTPAQ ILQLQSQLHH VRRAPGAPMA AVGQPMKRHG
101: VAALPVRPAT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTADEAAL AYDAAAFRLR GESARLNFPE LRRGGEHHGP PLDAAIDAKL RSICHGEDMP
201: QSQSNETPAP TPTLTPISFP DVKSEPVCSV SESSSSADGE VSSCSDVVPE MQLLDFSEAP WDESLLRKYP SLEIDWDAIL S

Best Arabidopsis Sequence Match ( AT5G65130.2 )
(BLAST)

001: MAMALNMNAY VDEFMEALEP FMKVTSSSST SNSSNPKPLT PNFIPNNDQV LPVSNQTGPI GLNQLTPTQI LQIQTELHLR QNQSRRRAGS HLLTAKPTSM
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT5G65130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.