Factsheet for HORVU4Hr1G071890.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G268100.1	Wheat	nucleus	63.77	66.67
TraesCS4D01G267500.1	Wheat	nucleus	63.41	62.28
TraesCS4A01G035400.2	Wheat	nucleus	63.41	62.28
Os03t0191900-01	Rice	nucleus	56.88	52.86
Zm00001d048208_P001	Maize	nucleus	54.35	50.51
Zm00001d028017_P001	Maize	nucleus	51.45	47.33
EER92713	Sorghum	nucleus	53.99	47.0
HORVU6Hr1G060220.1	Barley	nucleus	39.49	44.13
HORVU5Hr1G058270.1	Barley	nucleus	37.68	36.75
GSMUA_Achr3P04360_001	Banana	nucleus	31.52	34.8
HORVU6Hr1G074970.1	Barley	nucleus	36.59	30.61
AT1G36060.1	Thale cress	nucleus	34.42	30.25
CDX73367	Canola	nucleus	34.42	29.59
CDY48227	Canola	nucleus	34.06	29.28
Bra040381.1-P	Field mustard	nucleus	34.06	29.28
HORVU7Hr1G037180.1	Barley	nucleus, plastid	36.59	27.22
HORVU6Hr1G038120.3	Barley	nucleus	17.39	23.3
HORVU1Hr1G090250.1	Barley	plastid	23.55	21.96
HORVU7Hr1G029870.1	Barley	mitochondrion	14.86	17.3
HORVU6Hr1G060140.1	Barley	nucleus, plastid	27.54	13.74
HORVU7Hr1G089930.7	Barley	nucleus, plastid	13.04	13.19

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	UniProt:A0A287PL78	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU4Hr1G071890	EnsemblPlants:HORVU4Hr1G071890.3
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657
PANTHER:PTHR31657:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000B46A89F	SEG:seg	:

Description

No Description!

Coordinates

chrchr4H:-:582409306..582410136

Molecular Weight (calculated)

20782.3 Da

IEP (calculated)

5.877

GRAVY (calculated)

-0.317

Length

276 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXAMAM AAVGQPMKRH
101: GVAALPARPA AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDAAEEAA LAYDAAAFRL RGESARLNFP ELRRGGQHHG PPLDAAIDAK LHSICHGEDP
201: PQSQSNATPT PTSFPDVKSE PVCSVSESSS SADGEVSSCS DDVPEMQLLD FSEAPWDEHL LSKYPSLEID WDAILS

Best Arabidopsis Sequence Match ( AT1G22190.1 )
(BLAST)

001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N

Arabidopsis Description

RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.