Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G058270.1 | Barley | nucleus | 77.33 | 67.49 |
| TraesCS5D01G200900.2 | Wheat | nucleus | 76.52 | 66.55 |
| TraesCS5B01G193200.1 | Wheat | nucleus | 75.71 | 65.85 |
| KXG35507 | Sorghum | nucleus | 66.8 | 54.28 |
| Zm00001d020267_P001 | Maize | nucleus | 64.78 | 54.05 |
| HORVU4Hr1G071890.3 | Barley | nucleus | 44.13 | 39.49 |
| GSMUA_Achr9P12950_001 | Banana | nucleus | 44.94 | 32.74 |
| HORVU6Hr1G074970.1 | Barley | nucleus | 41.3 | 30.91 |
| HORVU7Hr1G037180.1 | Barley | nucleus, plastid | 43.72 | 29.11 |
| CDX73367 | Canola | nucleus | 37.25 | 28.66 |
| Bra040381.1-P | Field mustard | nucleus | 36.44 | 28.04 |
| CDY48227 | Canola | nucleus | 36.44 | 28.04 |
| AT1G36060.1 | Thale cress | nucleus | 35.63 | 28.03 |
| HORVU6Hr1G038120.3 | Barley | nucleus | 19.03 | 22.82 |
| HORVU1Hr1G090250.1 | Barley | plastid | 26.72 | 22.3 |
| HORVU7Hr1G029870.1 | Barley | mitochondrion | 17.41 | 18.14 |
| HORVU6Hr1G060140.1 | Barley | nucleus, plastid | 30.36 | 13.56 |
| HORVU7Hr1G089930.7 | Barley | nucleus, plastid | 14.57 | 13.19 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | UniProt:A0A287UCV1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ncoils:Coil |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G060220 |
| EnsemblPlants:HORVU6Hr1G060220.1 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31657 | PANTHER:PTHR31657:SF16 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B46E02E | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:+:399862432..399863282
Molecular Weight (calculated)
23170.6 Da
IEP (calculated)
5.057
GRAVY (calculated)
-0.515
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: THTSILVDYV GPPSAEKQED SCFPNTPNTM VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXTPPRPQ KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG
101: TFDTAEEAAL AYDQAAYRLR GDAARLNFPD NAASRGPLHA SVDAKLQTLC QNITASKNAK KSASVSASTA AATSSTPTSN CSSPSSDEAS SSLESAESSP
201: SPTTTAAEVP EMQQLDFSEA PWDEAAGFAL TKYPSYEIDW DSLLATN
101: TFDTAEEAAL AYDQAAYRLR GDAARLNFPD NAASRGPLHA SVDAKLQTLC QNITASKNAK KSASVSASTA AATSSTPTSN CSSPSSDEAS SSLESAESSP
201: SPTTTAAEVP EMQQLDFSEA PWDEAAGFAL TKYPSYEIDW DSLLATN
001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
Arabidopsis Description
RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.