Factsheet for TraesCS4A01G035400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G268100.1	Wheat	nucleus	88.97	94.7
TraesCS4D01G267500.1	Wheat	nucleus	94.66	94.66
Os03t0191900-01	Rice	nucleus	71.89	68.01
Zm00001d048208_P001	Maize	nucleus	68.33	64.65
Zm00001d028017_P001	Maize	nucleus	68.33	64.0
HORVU4Hr1G071890.3	Barley	nucleus	62.28	63.41
EER92713	Sorghum	nucleus	68.68	60.88
GSMUA_Achr3P04360_001	Banana	nucleus	37.01	41.6
TraesCS6A01G301900.1	Wheat	nucleus	43.77	37.5
AT1G36060.1	Thale cress	nucleus	38.79	34.71
CDX73367	Canola	nucleus	38.08	33.33
TraesCS7A01G180900.1	Wheat	nucleus, plastid	42.7	33.15
Bra040381.1-P	Field mustard	nucleus	37.72	33.02
CDY48227	Canola	nucleus	37.72	33.02
TraesCS6A01G360300.1	Wheat	mitochondrion	18.15	30.72
TraesCS7A01G145800.1	Wheat	mitochondrion, nucleus	17.79	30.12
TraesCS2A01G503100.1	Wheat	mitochondrion	16.37	29.3
TraesCS1A01G411100.1	Wheat	plastid	25.98	25.61
TraesCS6A01G181400.2	Wheat	nucleus	17.79	24.15
TraesCS7A01G376300.1	Wheat	nucleus	17.79	22.03
TraesCS2A01G373700.1	Wheat	nucleus	30.25	18.72
TraesCS6A01G235100.1	Wheat	nucleus	29.54	18.0

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF18	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4A01G035400	EnsemblPlants:TraesCS4A01G035400.2	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4A:+:27589297..27590142

Molecular Weight (calculated)

30504.0 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.362

Length

281 amino acids

Sequence
(BLAST)

001: MATTVDWRSY RPDLPAAMYH MVDGRDQVMH AFAPPTAQGA APTISFSFPC PGAEQSAGLL RGASYLTPAQ ILQLQSQLHH VRRAPGAAMA VAGQPMKRHG
101: VAALPAQPAA KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTADEAAL AYDAAAFRLR GESARLNFPE LRRGGEHHGP PLDAAIDAKL RSICHGEDLP
201: QSQSNATPAP TPTLTPSSFP DVKSEPGCSV SESSSSADGE VSSCSDVVPE MQLLDFSEAP WDESLLRKYP SLEIDWDAIL S

Best Arabidopsis Sequence Match ( AT1G22190.1 )
(BLAST)

001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N

Arabidopsis Description

RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.