Factsheet for TraesCS6A01G301900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G281200.1	Wheat	nucleus	97.87	96.4
TraesCS6B01G331000.1	Wheat	nucleus	95.73	94.29
HORVU6Hr1G074970.1	Barley	nucleus	92.99	92.42
Os02t0752800-01	Rice	nucleus	80.49	78.11
EES07235	Sorghum	nucleus	78.05	77.34
Zm00001d052229_P001	Maize	nucleus	74.39	77.22
Zm00001d018081_P001	Maize	nucleus	79.57	76.54
TraesCS7A01G180900.1	Wheat	nucleus, plastid	63.41	57.46
GSMUA_Achr3P04360_001	Banana	nucleus	40.85	53.6
TraesCS4A01G035400.2	Wheat	nucleus	37.5	43.77
CDY48227	Canola	nucleus	38.72	39.56
Bra040381.1-P	Field mustard	nucleus	38.72	39.56
CDX73367	Canola	nucleus	38.11	38.94
AT1G36060.1	Thale cress	nucleus	36.59	38.22
TraesCS6A01G360300.1	Wheat	mitochondrion	16.77	33.13
TraesCS2A01G503100.1	Wheat	mitochondrion	15.55	32.48
TraesCS7A01G145800.1	Wheat	mitochondrion, nucleus	15.55	30.72
TraesCS1A01G411100.1	Wheat	plastid	22.56	25.96
TraesCS6A01G181400.2	Wheat	nucleus	15.24	24.15
TraesCS7A01G376300.1	Wheat	nucleus	15.24	22.03
TraesCS6A01G235100.1	Wheat	nucleus	29.27	20.82
TraesCS2A01G373700.1	Wheat	nucleus	27.44	19.82

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF21	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6A01G301900	EnsemblPlants:TraesCS6A01G301900.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6A:-:535402899..535403885

Molecular Weight (calculated)

35231.1 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.382

Length

328 amino acids

Sequence
(BLAST)

001: MAAAIDMYKY NTSTHQIGSA ASASDQELMK ALEPFITIAS SSSSHYPYHY YSSPSMTQDS YMATPSSSSY ASSFAASPLP TTAPASPSFS QLPPLYSSQY
101: AVNGSMGLAQ LGPAQIQQIQ AQFFVQQQQQ QQRGLAGGSF LGPRALPMKQ SGSPPRASAA ALALAGVAPA QSKLYRGVRQ RHWGKWVAEI RLPKNRTRLW
201: LGTFDTAEDA ALAYDKAAFR LRGDLARLNF PSLRRGGAHL AGPLHASVDA KLTAICESLA APSSKNSEPE SPKCSASTEG EDSASAGSTP PVPEMEKLDF
301: TEAPWDESET FHLRKYPSVE IDWDSILS

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.