Factsheet for TraesCS4B01G268100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G267500.1	Wheat	nucleus	96.59	90.75
TraesCS4A01G035400.2	Wheat	nucleus	94.7	88.97
HORVU4Hr1G071890.3	Barley	nucleus	66.67	63.77
Os03t0191900-01	Rice	nucleus	70.83	62.96
Zm00001d048208_P001	Maize	nucleus	69.32	61.62
Zm00001d028017_P001	Maize	nucleus	67.05	59.0
EER92713	Sorghum	nucleus	69.32	57.73
TraesCS5B01G193200.1	Wheat	nucleus	44.32	41.2
GSMUA_Achr3P04360_001	Banana	nucleus	37.88	40.0
TraesCS6B01G331000.1	Wheat	nucleus	45.45	36.04
AT1G36060.1	Thale cress	nucleus	39.77	33.44
CDX73367	Canola	nucleus	39.39	32.4
Bra040381.1-P	Field mustard	nucleus	39.02	32.09
CDY48227	Canola	nucleus	39.02	32.09
TraesCS7B01G085900.1	Wheat	nucleus, plastid	44.7	32.07
TraesCS6B01G393200.1	Wheat	mitochondrion	19.32	30.0
TraesCS2B01G530800.1	Wheat	nucleus	17.05	29.8
TraesCS2B01G531100.1	Wheat	mitochondrion	17.42	29.68
TraesCS7B01G048100.1	Wheat	mitochondrion	18.18	29.63
TraesCS1B01G441300.1	Wheat	plastid	26.52	24.82
TraesCS6B01G210300.1	Wheat	nucleus	18.56	23.67
TraesCS7B01G277800.1	Wheat	nucleus	18.56	21.78
TraesCS6B01G263800.1	Wheat	nucleus	31.82	18.5
TraesCS2B01G390800.1	Wheat	nucleus	29.92	17.4

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF18	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4B01G268100	EnsemblPlants:TraesCS4B01G268100.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:541910546..541911340

Molecular Weight (calculated)

28827.1 Da

IEP (calculated)

6.419

GRAVY (calculated)

-0.318

Length

264 amino acids

Sequence
(BLAST)

001: MYHMVDSRDQ VMHAFAPATA QGAAPTISFA FPCPGAEQSA GLLRGASYLT PAQILQLQSQ LHHVRRAPGA AMAAVGQPMK RHGVAALPAR PATKLYRGVR
101: QRHWGKWVAE IRLPRNRTRL WLGTFDTADE AALAYDAAAF RLRGESARLN FPELRRGGEH HGPPLDAAID AKLRSICHGE DMPQSQSDET PAPTTTLTPI
201: SFPDVKSEPV CSVSESSSSA DGEVSSCSDV VPEMQLLDFS EAPWDEFLLR KYPSLEIDWD AILS

Best Arabidopsis Sequence Match ( AT5G65130.2 )
(BLAST)

001: MAMALNMNAY VDEFMEALEP FMKVTSSSST SNSSNPKPLT PNFIPNNDQV LPVSNQTGPI GLNQLTPTQI LQIQTELHLR QNQSRRRAGS HLLTAKPTSM
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT5G65130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.