Factsheet for GSMUA_Achr6P10440_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	67.05	62.72
GSMUA_Achr3P01650_001	Banana	nucleus	76.25	60.3
GSMUA_AchrUn_...	Banana	nucleus	49.04	46.55
GSMUA_Achr3P04360_001	Banana	nucleus	42.53	44.4
GSMUA_Achr10P...	Banana	nucleus	48.66	43.2
GSMUA_Achr9P12950_001	Banana	nucleus	51.34	39.53
Bra040381.1-P	Field mustard	nucleus	42.15	34.27
CDY48227	Canola	nucleus	42.15	34.27
CDX73367	Canola	nucleus	42.15	34.27
AT1G36060.1	Thale cress	nucleus	41.0	34.08
GSMUA_Achr7P19320_001	Banana	nucleus	19.16	32.68
GSMUA_Achr9P13760_001	Banana	mitochondrion	18.77	32.24
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	18.39	29.81
GSMUA_Achr6P05210_001	Banana	nucleus	19.92	28.57
GSMUA_Achr8P28500_001	Banana	nucleus	30.27	28.42
GSMUA_Achr10P...	Banana	mitochondrion	18.77	27.84
GSMUA_Achr1P27990_001	Banana	nucleus	25.29	26.61
GSMUA_Achr5P09470_001	Banana	nucleus	25.29	26.4
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	18.39	24.12
GSMUA_Achr7P10160_001	Banana	nucleus	18.77	23.79
GSMUA_Achr10P...	Banana	nucleus	29.5	22.38
GSMUA_Achr4P02200_001	Banana	mitochondrion	18.77	21.03
GSMUA_Achr4P26080_001	Banana	nucleus	31.03	19.95
GSMUA_Achr7P16060_001	Banana	mitochondrion	17.62	19.49
GSMUA_Achr8P14110_001	Banana	nucleus	28.35	18.59

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G10440_001	EnsemblPlants:GSMUA_Achr6P10440_001	EnsemblPlants:GSMUA_Achr6T10440_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0T5U3	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002958127	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G10440_001]

Coordinates

chr6:-:6990212..6991433

Molecular Weight (calculated)

28460.8 Da

IEP (calculated)

4.684

GRAVY (calculated)

-0.482

Length

261 amino acids

Sequence
(BLAST)

001: MATAMDVYCG TPAFSSSDPL REALEPFING APASTFSSSS SSASPEPLCF PSFSSPFSSF LHQNPIFPMK RSGSPPSPPK PNKLFRGVRQ RHWGKWVAEI
101: RLPRNRTRLW LGTFDTAEKA ALAYDRAAFM LRGDAARLNF PELRRNGAHM GSPLHSSVDA KLQAICDTLS NPEKQESAPL ISAATEEAGT NGEFGTSGLE
201: DTKSDISSSL EEDESSSSGS SAVSAMQYLD FTEAPWDESD SFVLRKYPSW EIDWDSVLSS D

Best Arabidopsis Sequence Match ( AT1G22190.1 )
(BLAST)

001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N

Arabidopsis Description

RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.