Factsheet for GSMUA_Achr10P16900_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P05210_001	Banana	nucleus	17.73	33.52
GSMUA_Achr7P19320_001	Banana	nucleus	14.24	32.03
GSMUA_Achr9P13760_001	Banana	mitochondrion	13.66	30.92
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	14.24	30.43
GSMUA_Achr6P10440_001	Banana	nucleus	22.38	29.5
GSMUA_Achr8P28500_001	Banana	nucleus	23.55	29.14
GSMUA_Achr7P10160_001	Banana	nucleus	17.44	29.13
GSMUA_AchrUn_...	Banana	nucleus	22.97	28.73
GSMUA_Achr10P...	Banana	mitochondrion	14.53	28.41
GSMUA_Achr10P...	Banana	nucleus	23.84	27.89
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	15.99	27.64
GSMUA_Achr10P...	Banana	nucleus	21.51	26.52
GSMUA_Achr3P04360_001	Banana	nucleus	19.19	26.4
GSMUA_Achr3P01650_001	Banana	nucleus	22.09	23.03
GSMUA_Achr9P12950_001	Banana	nucleus	21.51	21.83
GSMUA_Achr7P16060_001	Banana	mitochondrion	14.83	21.61
GSMUA_Achr5P09470_001	Banana	nucleus	15.7	21.6
GSMUA_Achr4P02200_001	Banana	mitochondrion	14.53	21.46
GSMUA_Achr1P27990_001	Banana	nucleus	13.95	19.35
GSMUA_Achr4P26080_001	Banana	nucleus	20.06	17.0
GSMUA_Achr8P14110_001	Banana	nucleus	18.6	16.08

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G16900_001	EnsemblPlants:GSMUA_Achr10P16900_001
EnsemblPlants:GSMUA_Achr10T16900_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0RIW5	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31657	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002956937	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G16900_001]

Coordinates

chr10:-:24309203..24310237

Molecular Weight (calculated)

37771.8 Da

IEP (calculated)

8.394

GRAVY (calculated)

-0.397

Length

344 amino acids

Sequence
(BLAST)

001: MEDQFRLVTS NGAVDPAMVM ATQAKRYGDN DGRSSSPTVL NFLEVKAERP TESFELNGSV STYLLFPSPP CSSLCSSLVR SYVPASDVPP AGKRDFHLQT
101: HQKLKQRSAP QWLQIHSTNS TSSLQQRLGH GPVKLFRGVR QRQLGKWVAE IRLPRNRTRV WLGTFDTAED AAMAYELGGD AVHLNFPHAK QQLHVAARGP
201: GHPHAAIASL LEAKLQASGG SACSTSPSWS LNELKRAWEK DLLRVGVDEC GPPEMKRHKT ASADSSPAFI ECSGQGAALG CRWGDDKQDA FLGHGHDMGF
301: SPQTLISEFL DSLRLSLPLS FFLLITSPER PLLRPPDFVP PIRE

Best Arabidopsis Sequence Match ( AT4G13620.1 )
(BLAST)

001: MITPIHTQHS LILVYINIYS PPILSKLRTG FILWTNTQKT NKKRNMEDQF PKIETSFMHD KLLSSGIYGF LSSSTPPQLL GVPIFLEGMK SPLLPASSTP
101: SYFVSPHDHE LTSSIHPSPV ASVPWNFLES FPQSQHPDHH PSKPPNLTLF LKEPKLLELS QSESNMSPYH KYIPNSFYQS DQNRNEWVEI NKTLTNYPSK
201: GFGNYWLSTT KTQPMKSKTR KVVQTTTPTK LYRGVRQRHW GKWVAEIRLP RNRTRVWLGT FETAEQAAMA YDTAAYILRG EFAHLNFPDL KHQLKSGSLR
301: CMIASLLESK IQQISSSQVS NSPSPPPPKV GTPEQKNHHM KMESGEDVMM KKQKSHKEVM EGDGVQLSRM PSLDMDLIWD ALSFPHSS

Arabidopsis Description

ERF062Ethylene-responsive transcription factor ERF062 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.