Factsheet for GSMUA_Achr9P28540_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P05210_001	Banana	nucleus	70.85	77.47
GSMUA_Achr7P10160_001	Banana	nucleus	72.36	69.9
HORVU6Hr1G038120.3	Barley	nucleus	69.35	66.99
TraesCS6B01G210300.1	Wheat	nucleus	69.35	66.67
TraesCS6A01G181400.2	Wheat	nucleus	69.35	66.67
Os02t0202000-01	Rice	nucleus	68.34	66.34
KRH09737	Soybean	nucleus	56.78	64.2
KXG29745	Sorghum	nucleus	67.84	63.38
Zm00001d015759_P001	Maize	nucleus	66.33	61.97
VIT_09s0002g06750.t01	Wine grape	mitochondrion	55.28	59.46
PGSC0003DMT400007494	Potato	nucleus	58.79	57.92
KRH62994	Soybean	nucleus	60.8	55.5
VIT_11s0016g05340.t01	Wine grape	nucleus	56.78	55.39
KRH54960	Soybean	nucleus	59.8	54.34
KRH20262	Soybean	nucleus	61.81	51.68
Solyc12g009490.1.1	Tomato	nucleus	57.29	51.35
KRH03696	Soybean	nucleus	61.31	51.05
GSMUA_Achr7P19320_001	Banana	nucleus	35.68	46.41
GSMUA_Achr9P13760_001	Banana	mitochondrion	34.17	44.74
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	36.18	44.72
GSMUA_Achr10P...	Banana	mitochondrion	34.17	38.64
GSMUA_Achr7P16060_001	Banana	mitochondrion	35.68	30.08
GSMUA_Achr4P02200_001	Banana	mitochondrion	33.17	28.33
GSMUA_Achr6P10440_001	Banana	nucleus	24.12	18.39
GSMUA_Achr8P28500_001	Banana	nucleus	25.63	18.35
GSMUA_Achr10P...	Banana	nucleus	25.63	18.28
GSMUA_Achr10P...	Banana	nucleus	25.63	17.35
GSMUA_Achr3P04360_001	Banana	nucleus	21.61	17.2
GSMUA_AchrUn_...	Banana	nucleus	23.62	17.09
GSMUA_Achr5P09470_001	Banana	nucleus	21.11	16.8
GSMUA_Achr1P27990_001	Banana	nucleus	20.1	16.13
GSMUA_Achr10P...	Banana	nucleus	27.64	15.99
GSMUA_Achr3P01650_001	Banana	nucleus	24.62	14.85
GSMUA_Achr9P12950_001	Banana	nucleus	25.13	14.75
GSMUA_Achr4P26080_001	Banana	nucleus	23.12	11.33
GSMUA_Achr8P14110_001	Banana	nucleus	20.1	10.05

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G28540_001	EnsemblPlants:GSMUA_Achr9P28540_001
EnsemblPlants:GSMUA_Achr9T28540_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0U4B1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF24	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294EC27

Description

Ethylene-responsive transcription factor WIN1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G28540_001]

Coordinates

chr9:+:32486196..32486934

Molecular Weight (calculated)

21731.9 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.437

Length

199 amino acids

Sequence
(BLAST)

001: MVQLKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDEAS VLMCGRNAKT NFPVPLNPDG DPGAVAAHES SKAALSEVLS AKLRKCCKAT
101: PSPSLTCLRL DTEKSHIGVW QKRAGTRADS SWVMTVELGN AKEAMMRPSS LAGDQGTSSQ GAVGGVDDEE RVALQMIEEL LSRNRPTPAS HAGEDGFFV

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.