Factsheet for Solyc12g009490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007494	Potato	nucleus	84.68	93.07
Solyc06g053240.2.1	Tomato	nucleus	11.71	83.87
KRH09737	Soybean	nucleus	52.25	65.91
VIT_09s0002g06750.t01	Wine grape	mitochondrion	51.8	62.16
Os02t0202000-01	Rice	nucleus	54.95	59.51
Solyc03g116610.2.1	Tomato	nucleus	53.6	58.91
TraesCS6B01G210300.1	Wheat	nucleus	54.5	58.45
TraesCS6A01G181400.2	Wheat	nucleus	54.5	58.45
HORVU6Hr1G038120.3	Barley	nucleus	54.05	58.25
Zm00001d015759_P001	Maize	nucleus	55.86	58.22
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	51.35	57.29
KXG29745	Sorghum	nucleus	54.5	56.81
GSMUA_Achr7P10160_001	Banana	nucleus	51.8	55.83
Solyc03g117130.2.1	Tomato	mitochondrion, nucleus	29.28	40.12
Solyc06g068360.2.1	Tomato	mitochondrion, nucleus	31.53	38.67
Solyc06g065820.2.1	Tomato	mitochondrion	30.18	32.84
Solyc04g054910.2.1	Tomato	nucleus	24.77	19.78
Solyc04g072900.1.1	Tomato	nucleus	23.42	19.7
Solyc08g082210.2.1	Tomato	nucleus	21.17	17.8
Solyc12g056980.1.1	Tomato	nucleus	24.32	17.59
Solyc09g091950.1.1	Tomato	extracellular, nucleus	23.87	12.65
Solyc07g054220.1.1	Tomato	nucleus	20.72	11.79
Solyc12g013660.1.1	Tomato	nucleus	17.12	10.76

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4DC37	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF24	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc12g009490.1	EnsemblPlants:Solyc12g009490.1.1
UniParc:UPI00027699A0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:2748974..2752098

Molecular Weight (calculated)

25220.2 Da

IEP (calculated)

8.878

GRAVY (calculated)

-1.062

Length

222 amino acids

Sequence
(BLAST)

001: MVHSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFDTAE EAARAYDEAA ILMSGRNAKT NFPITQDLDN NNNNNNNNNN NNNNNKNVKG KDQESSSSSS
101: FSSPKALSEI LHAKLRKCSK VPSPSLTCLR LDIENSHIGV WQKRAGPSSD SKWVMTVELQ KKNNPKNINV HEGELNNNNN NNNNDNNNNS KNSCGEITIR
201: SEMDEEERIA LQMIEELVHD LT

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.