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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 4
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400036634 Potato mitochondrion, nucleus 90.74 92.45
PGSC0003DMT400036817 Potato mitochondrion, nucleus 90.74 92.45
Solyc06g053240.2.1 Tomato nucleus 13.58 70.97
Solyc06g068360.2.1 Tomato mitochondrion, nucleus 66.05 59.12
Solyc06g065820.2.1 Tomato mitochondrion 59.26 47.06
Solyc03g116610.2.1 Tomato nucleus 41.98 33.66
Solyc12g009490.1.1 Tomato nucleus 40.12 29.28
Solyc04g072900.1.1 Tomato nucleus 33.33 20.45
Solyc04g054910.2.1 Tomato nucleus 31.48 18.35
Solyc08g082210.2.1 Tomato nucleus 29.63 18.18
Solyc12g056980.1.1 Tomato nucleus 32.72 17.26
Solyc12g013660.1.1 Tomato nucleus 24.69 11.33
Solyc07g054220.1.1 Tomato nucleus 25.31 10.51
Solyc09g091950.1.1 Tomato extracellular, nucleus 26.54 10.26
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10InterPro:AP2/ERF-transcript_factorInterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfInterPro:DNA-bd_dom_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR001471InterPro:IPR036955
UniProt:K4BLL5PFAM:PF00847PIRSF:PIRSF038123PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31194
PANTHER:PTHR31194:SF4SMART:SM00380SUPFAM:SSF54171EnsemblPlantsGene:Solyc03g117130.2EnsemblPlants:Solyc03g117130.2.1UniParc:UPI00027674DC
SEG:seg:::::
Description
No Description!
Coordinates
chr3:+:66377713..66378448
Molecular Weight (calculated)
18647.8 Da
IEP (calculated)
6.783
GRAVY (calculated)
-0.922
Length
162 amino acids
Sequence
(BLAST)
001: MSRPQQKYRG VRQRHWGSWV SEIRHPSLKT RIWLGTYETS EDAARAYDEA ARLMCGSTAR TNFPYNATES SRFLSSALIA KLQRCNMSSL TATSRRPGKT
101: RLEDKKENEI STLVRDTGDG EERQSESASQ QYMKALEDEH IEQMIEELLD YGSIEMCSVR NE
Best Arabidopsis Sequence Match ( AT5G25190.1 )
(BLAST)
001: MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR TNFPYNPNAI PTSSSKLLSA TLTAKLHKCY MASLQMTKQT
101: QTQTQTQTAR SQSADSDGVT ANESHLNRGV TETTEIKWED GNANMQQNFR PLEEDHIEQM IEELLHYGSI ELCSVLPTQT L
Arabidopsis Description
ERF003Ethylene-responsive transcription factor ERF003 [Source:UniProtKB/Swiss-Prot;Acc:Q94AW5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.