Factsheet for Solyc09g091950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080372	Potato	nucleus	58.47	94.96
Solyc06g053240.2.1	Tomato	nucleus	4.3	58.06
VIT_05s0029g00140.t01	Wine grape	nucleus	41.05	42.57
CDY53558	Canola	nucleus	33.41	40.11
Bra032724.1-P	Field mustard	nucleus	32.7	39.14
AT4G13620.1	Thale cress	nucleus	33.17	35.82
GSMUA_Achr8P28500_001	Banana	nucleus	23.63	35.61
KRH34596	Soybean	nucleus	32.46	35.14
KRG92191	Soybean	nucleus	33.89	34.8
Solyc04g072900.1.1	Tomato	nucleus	20.53	32.58
Solyc04g054910.2.1	Tomato	nucleus	20.53	30.94
Solyc06g068360.2.1	Tomato	mitochondrion, nucleus	11.69	27.07
Solyc03g117130.2.1	Tomato	mitochondrion, nucleus	10.26	26.54
Solyc03g116610.2.1	Tomato	nucleus	12.65	26.24
Solyc08g082210.2.1	Tomato	nucleus	16.47	26.14
Solyc12g056980.1.1	Tomato	nucleus	19.09	26.06
Solyc06g065820.2.1	Tomato	mitochondrion	11.93	24.51
Solyc12g009490.1.1	Tomato	nucleus	12.65	23.87
Solyc07g054220.1.1	Tomato	nucleus	17.18	18.46
Solyc12g013660.1.1	Tomato	nucleus	13.13	15.58

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4CWM1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF23	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc09g091950.1	EnsemblPlants:Solyc09g091950.1.1	UniParc:UPI000276B791	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:71154085..71155716

Molecular Weight (calculated)

46948.9 Da

IEP (calculated)

8.576

GRAVY (calculated)

-0.602

Length

419 amino acids

Sequence
(BLAST)

001: MENQSLKSES IMQKELPTCY KQVAIESLSR FFKDPHIFSD LNHEITFINS SPTKFSEFLP LNFHQNESSL SLSSSSSSLS TSSSYQHHQD QGNNNNIFPL
101: NNFLDHQTCA SSTNSLSSNY PTLGLFLQEP SILEISKRAA ESLSNKNHKS SSAALFPMSS SIGHESQIHY KEVATTNPTN WLKMNQTITN CTTTKGFSDY
201: WLSTTKTQPM KFKGSSRKSS LVHYEKSSSS SSSSSSSSSM IASQGKLFRG VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA EEAAFAYDTA AYMLRGDYAN
301: LNFPHLKNQL KANSINGNIT SLLEAKIRAI STQSKKKANN SSDRDEIIIS PKGLSDDDAT IKNTIVQNQE KEINCEKLME ITKVKNINNQ ENVDGVQLSR
401: MPSLDMDMIW DALLVSDLS

Best Arabidopsis Sequence Match ( AT4G13620.1 )
(BLAST)

001: MITPIHTQHS LILVYINIYS PPILSKLRTG FILWTNTQKT NKKRNMEDQF PKIETSFMHD KLLSSGIYGF LSSSTPPQLL GVPIFLEGMK SPLLPASSTP
101: SYFVSPHDHE LTSSIHPSPV ASVPWNFLES FPQSQHPDHH PSKPPNLTLF LKEPKLLELS QSESNMSPYH KYIPNSFYQS DQNRNEWVEI NKTLTNYPSK
201: GFGNYWLSTT KTQPMKSKTR KVVQTTTPTK LYRGVRQRHW GKWVAEIRLP RNRTRVWLGT FETAEQAAMA YDTAAYILRG EFAHLNFPDL KHQLKSGSLR
301: CMIASLLESK IQQISSSQVS NSPSPPPPKV GTPEQKNHHM KMESGEDVMM KKQKSHKEVM EGDGVQLSRM PSLDMDLIWD ALSFPHSS

Arabidopsis Description

ERF062Ethylene-responsive transcription factor ERF062 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.