Factsheet for AT4G13620.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53558	Canola	nucleus	73.71	81.95
Bra032724.1-P	Field mustard	nucleus	73.2	81.14
PGSC0003DMT400080372	Potato	nucleus	28.61	43.02
VIT_05s0029g00140.t01	Wine grape	nucleus	37.89	36.39
GSMUA_Achr8P28500_001	Banana	nucleus	24.74	34.53
KRH34596	Soybean	nucleus	34.02	34.11
KRG92191	Soybean	nucleus	35.31	33.58
Solyc09g091950.1.1	Tomato	extracellular, nucleus	35.82	33.17
AT4G39780.1	Thale cress	nucleus	22.16	31.62
AT1G22190.1	Thale cress	nucleus	20.36	30.27
AT2G22200.1	Thale cress	plastid	20.1	29.89
AT5G65130.2	Thale cress	nucleus	20.36	28.32
AT5G25190.1	Thale cress	mitochondrion	11.86	25.41
AT1G78080.1	Thale cress	nucleus	21.65	25.15
AT5G11190.1	Thale cress	mitochondrion, nucleus	12.11	24.87
AT5G25390.2	Thale cress	nucleus	11.86	24.34
AT1G64380.1	Thale cress	nucleus	20.88	24.18
AT1G15360.1	Thale cress	nucleus	12.37	24.12
AT1G36060.1	Thale cress	nucleus	18.56	22.93
AT4G28140.1	Thale cress	nucleus	16.49	21.92
AT2G20880.1	Thale cress	nucleus	17.27	19.94

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EntrezGene:826996	ProteinID:AEE83304.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ArrayExpress:AT4G13620	EnsemblPlantsGene:AT4G13620	RefSeq:AT4G13620	TAIR:AT4G13620	RefSeq:AT4G13620-TAIR-G	EnsemblPlants:AT4G13620.1
TAIR:AT4G13620.1	EMBL:AY560871	Unigene:At.33355	EMBL:BT029729	ProteinID:CAB36826.2	ProteinID:CAB78404.1
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009873	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	RefSeq:NP_193098.1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF23	UniProt:Q9SVQ0
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000009C914	SEG:seg	:	:

Description

ERF062Ethylene-responsive transcription factor ERF062 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ0]

Coordinates

chr4:+:7932131..7933579

Molecular Weight (calculated)

44257.1 Da

IEP (calculated)

9.983

GRAVY (calculated)

-0.580

Length

388 amino acids

Sequence
(BLAST)

001: MITPIHTQHS LILVYINIYS PPILSKLRTG FILWTNTQKT NKKRNMEDQF PKIETSFMHD KLLSSGIYGF LSSSTPPQLL GVPIFLEGMK SPLLPASSTP
101: SYFVSPHDHE LTSSIHPSPV ASVPWNFLES FPQSQHPDHH PSKPPNLTLF LKEPKLLELS QSESNMSPYH KYIPNSFYQS DQNRNEWVEI NKTLTNYPSK
201: GFGNYWLSTT KTQPMKSKTR KVVQTTTPTK LYRGVRQRHW GKWVAEIRLP RNRTRVWLGT FETAEQAAMA YDTAAYILRG EFAHLNFPDL KHQLKSGSLR
301: CMIASLLESK IQQISSSQVS NSPSPPPPKV GTPEQKNHHM KMESGEDVMM KKQKSHKEVM EGDGVQLSRM PSLDMDLIWD ALSFPHSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.