Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031371.1-P | Field mustard | nucleus | 75.48 | 75.77 |
| CDY38238 | Canola | nucleus | 75.1 | 75.38 |
| CDY21346 | Canola | nucleus | 75.1 | 75.38 |
| KRH53092 | Soybean | nucleus | 55.94 | 48.34 |
| AT1G78080.1 | Thale cress | nucleus | 61.69 | 48.2 |
| Solyc04g072900.1.1 | Tomato | nucleus | 47.89 | 47.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.43 | 46.91 |
| KRH62373 | Soybean | nucleus | 56.32 | 46.82 |
| Solyc12g056980.1.1 | Tomato | nucleus | 54.02 | 45.93 |
| AT4G39780.1 | Thale cress | nucleus | 45.98 | 44.12 |
| GSMUA_Achr10P... | Banana | nucleus | 48.66 | 43.2 |
| VIT_18s0001g05250.t01 | Wine grape | nucleus | 59.77 | 42.51 |
| PGSC0003DMT400022023 | Potato | nucleus | 53.64 | 41.3 |
| PGSC0003DMT400024508 | Potato | nucleus | 55.17 | 39.24 |
| AT1G36060.1 | Thale cress | nucleus | 46.36 | 38.53 |
| AT5G65130.2 | Thale cress | nucleus | 40.61 | 37.99 |
| AT2G22200.1 | Thale cress | plastid | 37.93 | 37.93 |
| AT5G25190.1 | Thale cress | mitochondrion | 21.46 | 30.94 |
| AT1G15360.1 | Thale cress | nucleus | 21.46 | 28.14 |
| AT5G25390.2 | Thale cress | nucleus | 19.16 | 26.45 |
| AT5G11190.1 | Thale cress | mitochondrion, nucleus | 18.39 | 25.4 |
| AT1G64380.1 | Thale cress | nucleus | 31.8 | 24.78 |
| AT4G28140.1 | Thale cress | nucleus | 24.14 | 21.58 |
| AT4G13620.1 | Thale cress | nucleus | 30.27 | 20.36 |
| AT2G20880.1 | Thale cress | nucleus | 24.9 | 19.35 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | EntrezGene:838824 | ProteinID:AAF87854.1 | ProteinID:AEE30209.1 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | ArrayExpress:AT1G22190 | EnsemblPlantsGene:AT1G22190 | RefSeq:AT1G22190 | TAIR:AT1G22190 | RefSeq:AT1G22190-TAIR-G |
| EnsemblPlants:AT1G22190.1 | TAIR:AT1G22190.1 | Unigene:At.26676 | EMBL:BT000907 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009873 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_173638.1 | PFAM:PF00847 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | UniProt:Q9LM15 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI00000AC698 | SEG:seg | : | : | : |
Description
RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
Coordinates
chr1:+:7835781..7837411
Molecular Weight (calculated)
29138.8 Da
IEP (calculated)
6.368
GRAVY (calculated)
-0.652
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.