Factsheet for PGSC0003DMT400024508

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011115
PGSC0003DMT400022023
PGSC0003DMT400024508
PGSC0003DMT400058456
PGSC0003DMT400069942
PGSC0003DMT400070468

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22190.1	PGSC0003DMT400069942	AT2G39760.1	19843165
AT1G78080.1	PGSC0003DMT400022023	AT1G78080.1	19843165
AT1G78080.1	PGSC0003DMT400024508	AT1G78080.1	19843165
AT1G78080.1	PGSC0003DMT400069942	AT2G39760.1	19843165
AT1G78080.1	PGSC0003DMT400011115	AT3G06190.1	19843165
AT1G78080.1	PGSC0003DMT400058456	AT3G43700.1	19843165
AT1G78080.1	PGSC0003DMT400070468	AT3G43700.1	19843165
AT1G78080.1	PGSC0003DMT400058456	AT5G21010.1	19843165
AT1G78080.1	PGSC0003DMT400070468	AT5G21010.1	19843165

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072900.1.1	Tomato	nucleus	70.03	97.35
PGSC0003DMT400022023	Potato	nucleus	58.86	63.72
PGSC0003DMT400039593	Potato	nucleus	11.17	56.94
CDY14636	Canola	nucleus, plastid	38.69	56.8
CDY38238	Canola	nucleus	39.78	56.15
CDY21346	Canola	nucleus	39.78	56.15
Bra031371.1-P	Field mustard	nucleus	39.78	56.15
KRH53092	Soybean	nucleus	45.5	55.3
AT1G22190.1	Thale cress	nucleus	39.24	55.17
KRH62373	Soybean	nucleus	47.14	55.1
KRH16699	Soybean	nucleus	45.5	53.53
CDX87480	Canola	nucleus	39.51	53.11
Bra003659.1-P	Field mustard	nucleus	45.78	52.83
Bra008343.1-P	Field mustard	nucleus	44.69	52.73
CDY26847	Canola	nucleus	44.69	52.73
CDX68032	Canola	nucleus	45.5	52.02
KRH18890	Soybean	nucleus	43.32	51.13
VIT_18s0001g05250.t01	Wine grape	nucleus	50.95	50.95
CDX79244	Canola	nucleus	46.32	50.9
AT1G78080.1	Thale cress	nucleus	46.05	50.6
GSMUA_AchrUn_...	Banana	nucleus	37.6	50.18
CDX88414	Canola	nucleus	43.87	50.16
Bra015634.1-P	Field mustard	nucleus	43.6	48.78
GSMUA_Achr10P...	Banana	nucleus	38.69	48.3
PGSC0003DMT400053152	Potato	nucleus	46.32	45.95
PGSC0003DMT400036634	Potato	mitochondrion, nucleus	15.26	35.22
PGSC0003DMT400036817	Potato	mitochondrion, nucleus	15.26	35.22
PGSC0003DMT400080372	Potato	nucleus	21.8	31.01
PGSC0003DMT400031685	Potato	nucleus	23.98	29.93
PGSC0003DMT400014953	Potato	nucleus	24.52	28.85
PGSC0003DMT400073334	Potato	mitochondrion	13.9	28.02
PGSC0003DMT400067218	Potato	mitochondrion	14.17	26.53
PGSC0003DMT400007494	Potato	nucleus	14.17	25.74
PGSC0003DMT400001703	Potato	nucleus	13.9	24.76
PGSC0003DMT400077702	Potato	nucleus	13.62	24.75
PGSC0003DMT400047265	Potato	nucleus	24.52	23.14
PGSC0003DMT400091991	Potato	nucleus	18.26	19.71
PGSC0003DMT400039576	Potato	nucleus	17.44	18.13

Protein Annotations

EntrezGene:102602854	MapMan:15.5.7.2	Gene3D:3.30.730.10	ProteinID:AEI98834	ProteinID:AEI98834.1	ProteinID:AET99101
ProteinID:AET99101.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EMBL:HM641797	InterPro:IPR001471	InterPro:IPR036955	EMBL:JN711507
UniProt:M1AK92	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400009475	PGSC:PGSC0003DMG400009475	EnsemblPlants:PGSC0003DMT400024508	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294AA5F
RefSeq:XP_006354001.1	SEG:seg	:	:	:	:

Description

Dehydration-responsive element binding protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400009475]

Coordinates

chr4:+:62774550..62776590

Molecular Weight (calculated)

40466.2 Da

IEP (calculated)

5.234

GRAVY (calculated)

-0.607

Length

367 amino acids

Sequence
(BLAST)

001: MAAMDFWNST SVDFQSSSEP ITSGGELMEA LEPFMKSASS SPSPPPSTFP PVFPSSSSST FPSSDFQSYP SFPPPTPTLS YPYTSSFYPS SQSTMSSEVC
101: STSTEMNSQI FSTRFSGYGM EQQGSIGLNQ LTPIQIQQIQ AQINFQNQQQ QQQMMLQTAH HASTMNFLAP KPVPMKQSGS PPKPSKLYRG VRQRHWGKWV
201: AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AYMLRGDFAR LNFPQLRHNG NLIGGDFGEY NPLHSSVDAK LKDICQSLAQ GKSIDSKKKK TKGSSAEKAA
301: VVKMEEEESK TVEVGSESDG SGSGSGGSSP VTELIFPEFT EEEPTWDMSE NFLLQKYPSH EIDWASL

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.