Factsheet for PGSC0003DMT400039576

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400091991	Potato	nucleus	87.25	90.59
Solyc12g013660.1.1	Tomato	nucleus	88.39	88.39
PGSC0003DMT400039593	Potato	nucleus	17.85	87.5
VIT_00s0662g00030.t01	Wine grape	nucleus	17.28	26.64
PGSC0003DMT400036634	Potato	mitochondrion, nucleus	11.33	25.16
PGSC0003DMT400036817	Potato	mitochondrion, nucleus	11.33	25.16
PGSC0003DMT400073334	Potato	mitochondrion	12.18	23.63
PGSC0003DMT400047265	Potato	nucleus	25.78	23.39
PGSC0003DMT400067218	Potato	mitochondrion	11.9	21.43
PGSC0003DMT400080372	Potato	nucleus	15.3	20.93
PGSC0003DMT400001703	Potato	nucleus	11.61	19.9
PGSC0003DMT400007494	Potato	nucleus	11.05	19.31
PGSC0003DMT400031685	Potato	nucleus	15.86	19.05
PGSC0003DMT400022023	Potato	nucleus	18.13	18.88
PGSC0003DMT400077702	Potato	nucleus	10.76	18.81
PGSC0003DMT400014953	Potato	nucleus	16.43	18.59
PGSC0003DMT400024508	Potato	nucleus	18.13	17.44
PGSC0003DMT400053152	Potato	nucleus	17.56	16.76

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1B8H7
PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400015312	PGSC:PGSC0003DMG400015312	EnsemblPlants:PGSC0003DMT400039576	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296C47B	SEG:seg

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400015312]

Coordinates

chr12:-:798253..799314

Molecular Weight (calculated)

40471.2 Da

IEP (calculated)

8.265

GRAVY (calculated)

-0.784

Length

353 amino acids

Sequence
(BLAST)

001: MENIESIDNV QSIMSMYRPL KKLKINPSSQ HNSLRSSGDG VEPVAQRIRA RGYEPQFRFP FALDDPPSSN CHLNWQSLTQ NQTMISFAPQ SCFNQCRITD
101: NGTRTTTMMN VYGTVSSPVP KQYRGVRQRH WGKWVAEIRL PRKRTRLWLG TFESAEEAAF AYDVEAFRLR GTDARLNFPH LFLGDLAPSD KNIDETNSAS
201: SSTTSFAKIP SQIQNNKRCI RQCRNKNRVP SAVEQSTSVL DKEIRMQNKA AYNKPLWYDP SQDSVRNESF VHQTSQIKMF DGSDFYESTP KYTSNIQQEN
301: SDMWKNVLQS NPFGNYSICT DDNLQQQQQP CDFTITDPGF GDDVFNFSSK LLE

Best Arabidopsis Sequence Match ( AT1G36060.1 )
(BLAST)

001: MADLFGGGHG GELMEALQPF YKSASTSASN PAFASSNDAF ASAPNDLFSS SSYYNPHASL FPSHSTTSYP DIYSGSMTYP SSFGSDLQQP ENYQSQFHYQ
101: NTITYTHQDN NTCMLNFIEP SQPGFMTQPG PSSGSVSKPA KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDRAAFKLR GDSARLNFPA
201: LRYQTGSSPS DTGEYGPIQA AVDAKLEAIL AEPKNQPGKT ERTSRKRAKA AASSAEQPSA PQQHSGSGES DGSGSPTSDV MVQEMCQEPE MPWNENFMLG
301: KCPSYEIDWA SILS

Arabidopsis Description

ERF055Ethylene-responsive transcription factor ERF055 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.