Factsheet for PGSC0003DMT400053152

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054910.2.1	Tomato	nucleus	69.73	92.81
PGSC0003DMT400039593	Potato	nucleus	11.35	58.33
VIT_00s0662g00040.t01	Wine grape	nucleus	58.92	58.29
KRH43213	Soybean	nucleus	47.84	56.73
KRH59367	Soybean	nucleus	47.03	55.77
AT4G39780.1	Thale cress	nucleus	39.73	54.04
CDX90362	Canola	nucleus	37.3	53.49
CDY31606	Canola	nucleus	37.57	53.46
Bra017879.1-P	Field mustard	nucleus	37.3	53.08
Bra010657.1-P	Field mustard	nucleus	36.49	52.33
KRH31278	Soybean	nucleus	44.86	52.2
KRG97594	Soybean	nucleus	43.51	52.1
CDY39455	Canola	nucleus	37.84	52.04
Bra011833.1-P	Field mustard	nucleus	38.38	51.45
CDX69387	Canola	nucleus	36.49	51.14
CDX72672	Canola	nucleus	35.41	50.97
CDY42004	Canola	nucleus	36.22	50.76
PGSC0003DMT400024508	Potato	nucleus	45.95	46.32
CDY25578	Canola	plastid	29.46	46.19
CDX89442	Canola	plastid	28.92	45.92
Bra030255.1-P	Field mustard	plastid	29.19	45.76
PGSC0003DMT400022023	Potato	nucleus	41.08	44.84
AT2G22200.1	Thale cress	plastid	31.35	44.44
PGSC0003DMT400080372	Potato	nucleus	22.43	32.17
PGSC0003DMT400036634	Potato	mitochondrion, nucleus	13.78	32.08
PGSC0003DMT400036817	Potato	mitochondrion, nucleus	13.78	32.08
PGSC0003DMT400067218	Potato	mitochondrion	15.41	29.08
PGSC0003DMT400073334	Potato	mitochondrion	13.78	28.02
PGSC0003DMT400031685	Potato	nucleus	21.89	27.55
PGSC0003DMT400014953	Potato	nucleus	22.97	27.24
PGSC0003DMT400007494	Potato	nucleus	14.86	27.23
PGSC0003DMT400077702	Potato	nucleus	13.78	25.25
PGSC0003DMT400001703	Potato	nucleus	14.05	25.24
PGSC0003DMT400047265	Potato	nucleus	22.16	21.08
PGSC0003DMT400091991	Potato	nucleus	17.03	18.53
PGSC0003DMT400039576	Potato	nucleus	16.76	17.56

Protein Annotations

EntrezGene:102591370	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1BUH6	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400020625	PGSC:PGSC0003DMG400020625	EnsemblPlants:PGSC0003DMT400053152	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295EED2
RefSeq:XP_006355363.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020625]

Coordinates

chr4:-:51602153..51603952

Molecular Weight (calculated)

40581.2 Da

IEP (calculated)

5.685

GRAVY (calculated)

-0.465

Length

370 amino acids

Sequence
(BLAST)

001: MAAAIDIYSS SNFSDPLTEE LMKALEPFMK GASCSSFSSS SPSSSSSSSF YTFGEPNLYT DFCAIPSTAT QMFSQGYSCF NNMGVAETGS IGLNHLTPSQ
101: ILQIQAQIQF QNQQQLLQLH QQQQSLGLLT PTSTYSKNLN STNFLGMKPV PMKQTGGASS QKATKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE
201: EAALAYDKAA YKLRGEFARL NFPHLRHQLN NEFSPLHSSV DAKLQAICQS LANPKSDDLC SKSNSKPRKS KTAAAAVPVD SNSAQESSSK SEITIDDSLK
301: GEFSYPENAN IKIEASSSSP APSEESSSSP ESDITFLDFA EPPSFDESEN FFLPKYPSVE IDWAALCNLL

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.