Factsheet for PGSC0003DMT400047265

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054220.1.1	Tomato	nucleus	91.0	90.77
PGSC0003DMT400039593	Potato	nucleus	11.31	61.11
AT4G28140.1	Thale cress	nucleus	35.99	47.95
Bra024222.1-P	Field mustard	nucleus	28.02	47.81
VIT_12s0059g00280.t01	Wine grape	nucleus	56.56	47.31
Bra026280.1-P	Field mustard	nucleus	34.96	46.42
CDY58717	Canola	nucleus	31.11	46.36
CDX89202	Canola	nucleus	34.7	46.08
CDX97423	Canola	nucleus	32.9	45.88
CDY19002	Canola	nucleus	34.45	45.73
CDY29884	Canola	nucleus	30.59	45.59
Bra010383.1-P	Field mustard	nucleus	32.13	45.29
KRH55997	Soybean	nucleus	46.53	44.91
CDY14255	Canola	nucleus	31.62	44.57
KRH25541	Soybean	nucleus	46.02	43.98
KRH22409	Soybean	nucleus	46.53	43.2
KRH26929	Soybean	nucleus	46.79	43.13
AT2G20880.1	Thale cress	nucleus	33.42	38.69
CDX81987	Canola	nucleus	30.85	38.34
GSMUA_Achr4P26080_001	Banana	nucleus	39.33	37.68
CDY69209	Canola	nucleus	30.08	37.62
Bra031146.1-P	Field mustard	nucleus	30.08	37.62
Os04t0529100-01	Rice	nucleus	32.13	33.16
Zm00001d017366_P001	Maize	nucleus	38.05	32.96
Zm00001d025910_P001	Maize	nucleus	33.93	32.67
Zm00001d051239_P001	Maize	nucleus	37.28	32.58
Os02t0638650-01	Rice	nucleus	38.82	31.92
OQU85375	Sorghum	nucleus	38.05	31.62
TraesCS6D01G217800.1	Wheat	nucleus	37.02	31.51
Zm00001d002867_P001	Maize	nucleus	36.5	31.42
TraesCS6B01G263800.1	Wheat	nucleus	36.5	31.28
TraesCS2D01G369900.1	Wheat	nucleus	36.5	31.21
TraesCS2A01G373700.1	Wheat	nucleus	36.25	31.06
VIT_19s0014g03180.t01	Wine grape	nucleus	32.13	31.02
TraesCS2B01G390800.1	Wheat	nucleus	35.73	30.62
TraesCS6A01G235100.1	Wheat	nucleus	35.73	30.15
KXG26694	Sorghum	nucleus	35.73	30.09
PGSC0003DMT400091991	Potato	nucleus	24.16	27.65
PGSC0003DMT400036634	Potato	mitochondrion, nucleus	10.8	26.42
PGSC0003DMT400036817	Potato	mitochondrion, nucleus	10.8	26.42
PGSC0003DMT400039576	Potato	nucleus	23.39	25.78
HORVU6Hr1G060140.1	Barley	nucleus, plastid	36.25	25.5
PGSC0003DMT400022023	Potato	nucleus	22.11	25.37
PGSC0003DMT400024508	Potato	nucleus	23.14	24.52
PGSC0003DMT400080372	Potato	nucleus	15.68	23.64
PGSC0003DMT400073334	Potato	mitochondrion	11.05	23.63
PGSC0003DMT400007494	Potato	nucleus	12.08	23.27
PGSC0003DMT400001703	Potato	nucleus	12.08	22.82
PGSC0003DMT400067218	Potato	mitochondrion	11.31	22.45
PGSC0003DMT400053152	Potato	nucleus	21.08	22.16
PGSC0003DMT400031685	Potato	nucleus	16.45	21.77
PGSC0003DMT400014953	Potato	nucleus	16.97	21.15
PGSC0003DMT400077702	Potato	nucleus	10.8	20.79

Protein Annotations

EntrezGene:102599959	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1BKF0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400018352	PGSC:PGSC0003DMG400018352	EnsemblPlants:PGSC0003DMT400047265	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF19	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294AA00
RefSeq:XP_006357496.1	SEG:seg	:	:	:	:

Description

RAP2 [Source:PGSC_GENE;Acc:PGSC0003DMG400018352]

Coordinates

chr7:+:48940643..48942769

Molecular Weight (calculated)

44199.4 Da

IEP (calculated)

5.114

GRAVY (calculated)

-0.922

Length

389 amino acids

Sequence
(BLAST)

001: MAEPEEQMEF DDNTFERQQR RPVFEEASMS NRRFKKIKSP ERQSSVQQPS LNSFVPCNNP TSMPFPPPPS SSRLVFPFAF DGTQQSMDSS SQLGTNAMPL
101: FHPQQQNQQQ MISFSPQQCL YPPYFAGDLG PSQNQQQMLR YWNETLNLSP RGRMMMMSRL GQDSRGIFRP QQVQVQPISA TKLYRGVRQR HWGKWVAEIR
201: LPRNRTRLWL GTFDTAEDAA MAYDREAYKL RGDNAKLNFP ELFIGKDKGE PSLSSPIAPH ESSLPEQNSE SLELQPINNE LPPSPPPQPP PEGDNHDKDS
301: GIGSSEVTTN SQSSELVWGD MAEAWFNATG WGPGSPVWDD LDSNNNLMFP PNLHFGNFCQ QEPHNSDPHQ HHDMNSDPSS PSCPMRPFF

Best Arabidopsis Sequence Match ( AT4G28140.1 )
(BLAST)

001: MDFDEELNLC ITKGKNVDHS FGGEASSTSP RSMKKMKSPS RPKPYFQSSS SPYSLEAFPF SLDPTLQNQQ QQLGSYVPVL EQRQDPTMQG QKQMISFSPQ
101: QQQQQQQYMA QYWSDTLNLS PRGRMMMMMS QEAVQPYIAT KLYRGVRQRQ WGKWVAEIRK PRSRARLWLG TFDTAEEAAM AYDRQAFKLR GHSATLNFPE
201: HFVNKESELH DSNSSDQKEP ETPQPSEVNL ESKELPVIDV GREEGMAEAW YNAITSGWGP ESPLWDDLDS SHQFSSESSS SSPLSCPMRP FF

Arabidopsis Description

ERF054Ethylene-responsive transcription factor ERF054 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.