Factsheet for Bra026280.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89202	Canola	nucleus	99.66	99.66
CDY19002	Canola	nucleus	92.15	92.15
Bra010383.1-P	Field mustard	nucleus	77.82	82.61
Bra024222.1-P	Field mustard	nucleus	62.12	79.82
AT4G28140.1	Thale cress	nucleus	74.4	74.66
Bra024357.1-P	Field mustard	mitochondrion	18.43	43.9
Bra031146.1-P	Field mustard	nucleus	46.08	43.41
PGSC0003DMT400047265	Potato	nucleus	46.42	34.96
Solyc07g054220.1.1	Tomato	nucleus	46.08	34.62
VIT_12s0059g00280.t01	Wine grape	nucleus	48.46	30.54
KRH55997	Soybean	nucleus	40.96	29.78
KRH25541	Soybean	nucleus	41.3	29.73
KRH26929	Soybean	nucleus	42.66	29.62
KRH22409	Soybean	nucleus	41.98	29.36
GSMUA_Achr4P26080_001	Banana	nucleus	38.57	27.83
Zm00001d025910_P001	Maize	nucleus	38.23	27.72
Os04t0529100-01	Rice	nucleus	35.15	27.32
Zm00001d017366_P001	Maize	nucleus	41.64	27.17
Bra030255.1-P	Field mustard	plastid	21.84	27.12
Zm00001d002867_P001	Maize	nucleus	41.3	26.77
Bra017879.1-P	Field mustard	nucleus	23.55	26.54
Bra010657.1-P	Field mustard	nucleus	23.21	26.36
Zm00001d051239_P001	Maize	nucleus	39.93	26.29
TraesCS2A01G373700.1	Wheat	nucleus	40.61	26.21
Os02t0638650-01	Rice	nucleus	41.98	26.0
TraesCS2B01G390800.1	Wheat	nucleus	40.27	25.99
TraesCS6D01G217800.1	Wheat	nucleus	40.27	25.82
VIT_19s0014g03180.t01	Wine grape	nucleus	35.49	25.81
KXG26694	Sorghum	nucleus	40.61	25.76
TraesCS2D01G369900.1	Wheat	nucleus	39.93	25.71
OQU85375	Sorghum	nucleus	40.96	25.64
TraesCS6B01G263800.1	Wheat	nucleus	39.25	25.33
Bra011833.1-P	Field mustard	nucleus	23.21	24.64
TraesCS6A01G235100.1	Wheat	nucleus	38.57	24.51
Bra031371.1-P	Field mustard	nucleus	21.16	23.85
Bra024358.1-P	Field mustard	nucleus	22.18	23.05
Bra031880.1-P	Field mustard	nucleus	21.5	22.74
Bra008985.1-P	Field mustard	nucleus	14.33	22.46
Bra036543.1-P	Field mustard	nucleus	13.99	22.4
Bra003659.1-P	Field mustard	nucleus	24.23	22.33
Bra020490.1-P	Field mustard	mitochondrion	13.31	22.29
Bra026140.1-P	Field mustard	nucleus	15.02	22.22
Bra040381.1-P	Field mustard	nucleus	23.89	21.81
Bra036536.1-P	Field mustard	mitochondrion	13.31	21.79
Bra008343.1-P	Field mustard	nucleus	22.87	21.54
Bra016663.1-P	Field mustard	nucleus	14.68	21.5
HORVU6Hr1G060140.1	Barley	nucleus, plastid	39.93	21.16
Bra009824.1-P	Field mustard	mitochondrion	13.31	20.31
Bra015634.1-P	Field mustard	nucleus	22.18	19.82
Bra027736.1-P	Field mustard	nucleus	20.48	19.67
Bra032724.1-P	Field mustard	nucleus	22.53	18.86
Bra027697.1-P	Field mustard	nucleus	19.45	18.45
Bra026770.1-P	Field mustard	nucleus	10.24	17.54
Bra009837.1-P	Field mustard	mitochondrion, nucleus	9.56	16.47

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra026280	EnsemblPlants:Bra026280.1
EnsemblPlants:Bra026280.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EBX1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF19	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002543F36	SEG:seg

Description

AT4G28140 (E=2e-098) | AP2 domain-containing transcription factor, putative

Coordinates

chrA01:-:10240213..10241094

Molecular Weight (calculated)

33225.6 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.890

Length

293 amino acids

Sequence
(BLAST)

001: MDFDEELNLC TKGKSIVPSS GEASSTTSPR SIKKMRNPDH RSKPYFPFSS PYSNSLPAFP FSFDPTTQNQ QQQQLGYVPI NQQNNPTIQG QNQMISFSPQ
101: QPQQQQQYMF KYWSDTLNLS PRGRMMMMNQ ESVLPYSSTK LYRGVRQRQW GKWVAEIRKP RSRARLWLGT FDTAEEAAMA YDLQAFKLRG HNATLNFPER
201: FVNKEIEPND STDASSSLHP KQSETPQPNE PNEGNLKSKE VAVSDGGVEE GMAEAWFNAV AAGWGPESPL WDDLDNSQFS QNSTSSCPMK PFI

Best Arabidopsis Sequence Match ( AT4G28140.1 )
(BLAST)

001: MDFDEELNLC ITKGKNVDHS FGGEASSTSP RSMKKMKSPS RPKPYFQSSS SPYSLEAFPF SLDPTLQNQQ QQLGSYVPVL EQRQDPTMQG QKQMISFSPQ
101: QQQQQQQYMA QYWSDTLNLS PRGRMMMMMS QEAVQPYIAT KLYRGVRQRQ WGKWVAEIRK PRSRARLWLG TFDTAEEAAM AYDRQAFKLR GHSATLNFPE
201: HFVNKESELH DSNSSDQKEP ETPQPSEVNL ESKELPVIDV GREEGMAEAW YNAITSGWGP ESPLWDDLDS SHQFSSESSS SSPLSCPMRP FF

Arabidopsis Description

ERF054Ethylene-responsive transcription factor ERF054 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.