Factsheet for Bra009837.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88176	Canola	nucleus	95.88	86.24
Bra036543.1-P	Field mustard	nucleus	77.06	71.58
AT5G25390.2	Thale cress	nucleus	75.29	67.72
Bra008985.1-P	Field mustard	nucleus	55.29	50.27
Bra026770.1-P	Field mustard	nucleus	47.65	47.37
VIT_04s0008g05440.t01	Wine grape	nucleus	50.59	44.33
Bra026140.1-P	Field mustard	nucleus	48.24	41.41
KRH05157	Soybean	nucleus	48.24	41.21
Bra016663.1-P	Field mustard	nucleus	47.65	40.5
PGSC0003DMT400077702	Potato	nucleus	47.06	39.6
Bra020490.1-P	Field mustard	mitochondrion	30.0	29.14
Bra036536.1-P	Field mustard	mitochondrion	29.41	27.93
Bra009824.1-P	Field mustard	mitochondrion	30.0	26.56
Bra024357.1-P	Field mustard	mitochondrion	14.71	20.33
Bra030255.1-P	Field mustard	plastid	20.59	14.83
Bra010657.1-P	Field mustard	nucleus	20.59	13.57
Bra017879.1-P	Field mustard	nucleus	20.0	13.08
Bra027736.1-P	Field mustard	nucleus	22.94	12.79
Bra031371.1-P	Field mustard	nucleus	19.41	12.69
Bra011833.1-P	Field mustard	nucleus	20.59	12.68
Bra031880.1-P	Field mustard	nucleus	20.59	12.64
Bra024358.1-P	Field mustard	nucleus	20.59	12.41
Bra027697.1-P	Field mustard	nucleus	21.76	11.97
Bra003659.1-P	Field mustard	nucleus	22.35	11.95
Bra024222.1-P	Field mustard	nucleus	15.88	11.84
Bra008343.1-P	Field mustard	nucleus	21.18	11.58
Bra015634.1-P	Field mustard	nucleus	21.76	11.28
Bra040381.1-P	Field mustard	nucleus	20.0	10.59
Bra010383.1-P	Field mustard	nucleus	16.47	10.14
Solyc06g053240.2.1	Tomato	nucleus	1.76	9.68
Bra026280.1-P	Field mustard	nucleus	16.47	9.56
Bra032724.1-P	Field mustard	nucleus	18.82	9.14
Bra031146.1-P	Field mustard	nucleus	15.29	8.36

Protein Annotations

MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra009837
EnsemblPlants:Bra009837.1	EnsemblPlants:Bra009837.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4D039	PFAM:PF00847	PIRSF:PIRSF038123
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF13	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000253F2EA
SEG:seg	:	:	:	:	:

Description

AT5G25390 (E=2e-057) SHN2 | SHN2 (shine2); DNA binding / transcription factor

Coordinates

chrA06:+:17611082..17611594

Molecular Weight (calculated)

18890.4 Da

IEP (calculated)

7.968

GRAVY (calculated)

-0.529

Length

170 amino acids

Sequence
(BLAST)

001: MPSVCVVSKR RVWLGTFNTA EEAAKAYDQA AVIMNGHNAK TNFPVIKSND SDSSDINSLS RSPKWLSEHL NAKLRKNCKD QTPYLTCLRL DNDSSHIGVW
101: QKRAGSKTTQ NWVKLVELSD GVNARAGDVG INKMKKKIDD VEEEDQVAMQ MIEELLNWTC PASASISGLH

Best Arabidopsis Sequence Match ( AT5G25390.2 )
(BLAST)

001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV

Arabidopsis Description

SHN3SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.