Factsheet for Bra015634.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra001186.1-P
Bra003659.1-P
Bra006591.1-P
Bra008343.1-P
Bra015634.1-P
Bra017053.1-P
Bra020142.1-P
Bra020764.1-P
Bra036437.1-P
Bra040233.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78080.1	Bra003659.1-P	AT1G78080.1	19843165
AT1G78080.1	Bra008343.1-P	AT1G78080.1	19843165
AT1G78080.1	Bra015634.1-P	AT1G78080.1	19843165
AT1G78080.1	Bra000147.1-P	AT2G39760.1	19843165
AT1G78080.1	Bra017053.1-P	AT2G39760.1	19843165
AT1G78080.1	Bra036437.1-P	AT3G03740.1	19843165
AT1G78080.1	Bra001186.1-P	AT3G06190.1	19843165
AT1G78080.1	Bra020764.1-P	AT3G06190.1	19843165
AT1G78080.1	Bra040233.1-P	AT3G06190.1	19843165
AT1G78080.1	Bra006591.1-P	AT5G21010.1	19843165
AT1G78080.1	Bra020142.1-P	AT5G21010.1	19843165

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88414	Canola	nucleus	94.82	96.88
CDX87480	Canola	nucleus	80.49	96.7
Bra008343.1-P	Field mustard	nucleus	75.91	80.06
Bra003659.1-P	Field mustard	nucleus	77.44	79.87
AT1G78080.1	Thale cress	nucleus	77.13	75.75
Bra031371.1-P	Field mustard	nucleus	50.0	63.08
Solyc04g072900.1.1	Tomato	nucleus	42.07	52.27
KRH16699	Soybean	nucleus	49.09	51.6
Bra024357.1-P	Field mustard	mitochondrion	18.9	50.41
KRH18890	Soybean	nucleus	47.26	49.84
Bra017879.1-P	Field mustard	nucleus	39.02	49.23
GSMUA_AchrUn_...	Banana	nucleus	41.16	49.09
Bra010657.1-P	Field mustard	nucleus	37.8	48.06
GSMUA_Achr10P...	Banana	nucleus	42.99	47.96
Solyc12g056980.1.1	Tomato	nucleus	44.51	47.56
Bra011833.1-P	Field mustard	nucleus	39.63	47.1
PGSC0003DMT400022023	Potato	nucleus	45.43	43.95
Bra024358.1-P	Field mustard	nucleus	37.5	43.62
PGSC0003DMT400024508	Potato	nucleus	48.78	43.6
Bra030255.1-P	Field mustard	plastid	31.1	43.22
Bra031880.1-P	Field mustard	nucleus	35.67	42.24
Bra040381.1-P	Field mustard	nucleus	39.94	40.81
Bra020490.1-P	Field mustard	mitochondrion	16.16	30.29
Bra036536.1-P	Field mustard	mitochondrion	16.46	30.17
Bra026140.1-P	Field mustard	nucleus	17.68	29.29
Bra016663.1-P	Field mustard	nucleus	17.68	29.0
Bra027697.1-P	Field mustard	nucleus	26.83	28.48
Bra009824.1-P	Field mustard	mitochondrion	16.46	28.12
Bra036543.1-P	Field mustard	nucleus	15.55	27.87
Bra008985.1-P	Field mustard	nucleus	15.85	27.81
Bra027736.1-P	Field mustard	nucleus	25.61	27.54
Bra024222.1-P	Field mustard	nucleus	17.68	25.44
Bra026770.1-P	Field mustard	nucleus	12.8	24.56
Bra032724.1-P	Field mustard	nucleus	25.91	24.29
Bra010383.1-P	Field mustard	nucleus	19.21	22.83
Bra031146.1-P	Field mustard	nucleus	21.34	22.51
Bra026280.1-P	Field mustard	nucleus	19.82	22.18
Bra009837.1-P	Field mustard	mitochondrion, nucleus	11.28	21.76

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra015634	EnsemblPlants:Bra015634.1
EnsemblPlants:Bra015634.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DGK9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002541B7D	SEG:seg

Description

AT1G78080 (E=6e-106) RAP2.4 | RAP2.4 (related to AP2 4); DNA binding / transcription factor

Coordinates

chrA07:+:21638101..21639087

Molecular Weight (calculated)

36134.2 Da

IEP (calculated)

6.863

GRAVY (calculated)

-0.544

Length

328 amino acids

Sequence
(BLAST)

001: MEAALNMYNS ITFQQPDSFG GGELMEALVP YINSVSNSSP YLASAFIQPA ASAFPPSLPT FPAYYPEDYS TFMTQPFTYG SDLHQTGSLT GLNHLSSSQT
101: HPLPPMHHQS HNNTFSNLLS PKPLLMKQTG ATGSCFAYGA PAKPTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EEAALAYDKA AYKLRGDFAR
201: LNFPNLRHNG SHIGGEFGEY KPLHSTVDAK LEAICQSMAE AEKNGKTMTK ASKKRASKTV SSPEKVKAEN NSNSVGGSPP VTEFVESAGS SPLSDLTFAD
301: TEEPPQWNET FSLEKYPSYE IDWDSILS

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.