Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g056980.1.1 | Tomato | nucleus | 86.14 | 95.11 |
| PGSC0003DMT400024508 | Potato | nucleus | 63.72 | 58.86 |
| PGSC0003DMT400039593 | Potato | nucleus | 12.39 | 58.33 |
| CDY14636 | Canola | nucleus, plastid | 39.82 | 54.0 |
| AT1G22190.1 | Thale cress | nucleus | 41.3 | 53.64 |
| CDY38238 | Canola | nucleus | 40.71 | 53.08 |
| Bra031371.1-P | Field mustard | nucleus | 40.41 | 52.69 |
| CDY21346 | Canola | nucleus | 40.41 | 52.69 |
| KRH53092 | Soybean | nucleus | 45.43 | 50.99 |
| CDX87480 | Canola | nucleus | 41.0 | 50.92 |
| VIT_18s0001g05250.t01 | Wine grape | nucleus | 52.21 | 48.23 |
| KRH62373 | Soybean | nucleus | 44.54 | 48.09 |
| KRH16699 | Soybean | nucleus | 44.25 | 48.08 |
| CDY26847 | Canola | nucleus | 43.95 | 47.91 |
| Bra008343.1-P | Field mustard | nucleus | 43.95 | 47.91 |
| Bra003659.1-P | Field mustard | nucleus | 44.54 | 47.48 |
| AT1G78080.1 | Thale cress | nucleus | 46.61 | 47.31 |
| CDX68032 | Canola | nucleus | 44.25 | 46.73 |
| CDX88414 | Canola | nucleus | 43.95 | 46.42 |
| CDX79244 | Canola | nucleus | 45.43 | 46.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.17 | 45.82 |
| KRH18890 | Soybean | nucleus | 41.89 | 45.66 |
| Bra015634.1-P | Field mustard | nucleus | 43.95 | 45.43 |
| GSMUA_Achr10P... | Banana | nucleus | 37.46 | 43.2 |
| PGSC0003DMT400053152 | Potato | nucleus | 44.84 | 41.08 |
| PGSC0003DMT400036634 | Potato | mitochondrion, nucleus | 15.63 | 33.33 |
| PGSC0003DMT400036817 | Potato | mitochondrion, nucleus | 15.63 | 33.33 |
| PGSC0003DMT400073334 | Potato | mitochondrion | 15.93 | 29.67 |
| PGSC0003DMT400031685 | Potato | nucleus | 24.78 | 28.57 |
| PGSC0003DMT400080372 | Potato | nucleus | 21.53 | 28.29 |
| PGSC0003DMT400067218 | Potato | mitochondrion | 16.22 | 28.06 |
| PGSC0003DMT400014953 | Potato | nucleus | 25.66 | 27.88 |
| PGSC0003DMT400007494 | Potato | nucleus | 15.63 | 26.24 |
| PGSC0003DMT400001703 | Potato | nucleus | 15.04 | 24.76 |
| PGSC0003DMT400077702 | Potato | nucleus | 14.45 | 24.26 |
| PGSC0003DMT400047265 | Potato | nucleus | 25.37 | 22.11 |
| PGSC0003DMT400091991 | Potato | nucleus | 19.17 | 19.12 |
| PGSC0003DMT400039576 | Potato | nucleus | 18.88 | 18.13 |
Protein Annotations
| EntrezGene:102585333 | MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| UniProt:M1AG11 | PFAM:PF00847 | EnsemblPlantsGene:PGSC0003DMG400008538 | PGSC:PGSC0003DMG400008538 | EnsemblPlants:PGSC0003DMT400022023 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000294DCED |
| RefSeq:XP_006360275.1 | SEG:seg | : | : | : | : |
Description
Dehydration-responsive element binding protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400008538]
Coordinates
chr12:+:55247031..55248461
Molecular Weight (calculated)
37196.4 Da
IEP (calculated)
7.540
GRAVY (calculated)
-0.535
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSTKDFWT TTLLDLNSSN SGGELMEALA PFIKSASSPS PSPSVSPYFD LQSSSLSTSY LYESFSSTSQ PNMSYYDNGC STSSTITPTF SQGFSGIMEA
101: EQPGSIWLNQ AQIYLPQQIM PAVTFQNNNQ YVSYLGPKPV SMKQSGSPPK PPKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK
201: LRGEFARLNF PHLRHNGSLI GSEFGEYKPL HSSVDAKLQA ICQDLAQGKS IDTKKKRKVS SKAMVVVVEE KEDNKRKTTA EAGSESDGSG SGSGSGSGSG
301: SGSSPILEYT FDSIWDMCSE NYVLHKDPSQ EIFNWASLL
101: EQPGSIWLNQ AQIYLPQQIM PAVTFQNNNQ YVSYLGPKPV SMKQSGSPPK PPKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK
201: LRGEFARLNF PHLRHNGSLI GSEFGEYKPL HSSVDAKLQA ICQDLAQGKS IDTKKKRKVS SKAMVVVVEE KEDNKRKTTA EAGSESDGSG SGSGSGSGSG
301: SGSSPILEYT FDSIWDMCSE NYVLHKDPSQ EIFNWASLL
001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
Arabidopsis Description
RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.