Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22190.1 | CDX93236 | AT2G39760.1 | 19843165 |
| AT1G22190.1 | CDX93238 | AT2G39760.1 | 19843165 |
| AT1G22190.1 | CDY07031 | AT2G39760.1 | 19843165 |
| AT1G22190.1 | CDY07638 | AT2G39760.1 | 19843165 |
| AT1G22190.1 | CDY61778 | AT2G39760.1 | 19843165 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031371.1-P | Field mustard | nucleus | 96.54 | 96.54 |
| CDY21346 | Canola | nucleus | 96.54 | 96.54 |
| AT1G22190.1 | Thale cress | nucleus | 75.38 | 75.1 |
| CDY14636 | Canola | nucleus, plastid | 58.08 | 60.4 |
| CDX87480 | Canola | nucleus | 60.77 | 57.88 |
| CDX68032 | Canola | nucleus | 64.62 | 52.34 |
| CDX88414 | Canola | nucleus | 63.46 | 51.4 |
| CDY08817 | Canola | mitochondrion | 24.23 | 51.22 |
| CDY26847 | Canola | nucleus | 61.15 | 51.13 |
| CDX79244 | Canola | nucleus | 65.0 | 50.6 |
| KRH53092 | Soybean | nucleus | 56.92 | 49.01 |
| KRH62373 | Soybean | nucleus | 57.69 | 47.77 |
| Solyc04g072900.1.1 | Tomato | nucleus | 48.08 | 47.35 |
| CDY31606 | Canola | nucleus | 46.15 | 46.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.46 | 45.82 |
| CDX90362 | Canola | nucleus | 45.38 | 45.74 |
| CDX72672 | Canola | nucleus | 45.0 | 45.53 |
| CDY39455 | Canola | nucleus | 46.54 | 44.98 |
| Solyc12g056980.1.1 | Tomato | nucleus | 52.69 | 44.63 |
| CDX69387 | Canola | nucleus | 45.0 | 44.32 |
| CDY42004 | Canola | nucleus | 44.62 | 43.94 |
| GSMUA_Achr10P... | Banana | nucleus | 48.85 | 43.2 |
| VIT_18s0001g05250.t01 | Wine grape | nucleus | 60.38 | 42.78 |
| CDY08816 | Canola | nucleus | 44.23 | 40.78 |
| CDX89442 | Canola | plastid | 36.54 | 40.77 |
| PGSC0003DMT400022023 | Potato | nucleus | 53.08 | 40.71 |
| CDY25578 | Canola | plastid | 36.54 | 40.25 |
| CDX73367 | Canola | nucleus | 49.62 | 40.19 |
| CDY48227 | Canola | nucleus | 49.23 | 39.88 |
| PGSC0003DMT400024508 | Potato | nucleus | 56.15 | 39.78 |
| CDY14542 | Canola | nucleus | 42.69 | 39.36 |
| CDY33983 | Canola | nucleus | 41.54 | 39.27 |
| CDY31284 | Canola | nucleus | 39.62 | 37.05 |
| CDY65537 | Canola | mitochondrion | 20.77 | 31.4 |
| CDX96845 | Canola | nucleus | 21.54 | 30.94 |
| CDX83982 | Canola | nucleus | 21.54 | 30.94 |
| CDX88163 | Canola | mitochondrion | 20.77 | 30.86 |
| CDY19812 | Canola | mitochondrion | 20.77 | 30.17 |
| CDY36551 | Canola | nucleus | 21.15 | 29.89 |
| CDX87096 | Canola | mitochondrion | 20.77 | 29.83 |
| CDY39637 | Canola | nucleus | 21.54 | 29.32 |
| CDY67940 | Canola | nucleus | 21.15 | 28.95 |
| CDY05479 | Canola | mitochondrion | 20.0 | 28.11 |
| CDY05373 | Canola | mitochondrion | 19.62 | 27.72 |
| CDY19805 | Canola | nucleus | 19.23 | 27.17 |
| CDY46525 | Canola | nucleus | 29.23 | 26.57 |
| CDX80507 | Canola | nucleus | 19.23 | 26.45 |
| CDY68539 | Canola | mitochondrion, nucleus | 18.85 | 26.34 |
| CDX69779 | Canola | nucleus | 18.85 | 26.2 |
| CDY71425 | Canola | nucleus | 29.23 | 25.94 |
| CDX88176 | Canola | nucleus | 18.85 | 25.93 |
| CDY47850 | Canola | nucleus | 30.38 | 25.9 |
| CDX87089 | Canola | nucleus | 19.23 | 25.38 |
| CDY29884 | Canola | nucleus | 23.46 | 23.37 |
| CDY58717 | Canola | nucleus | 23.08 | 22.99 |
| CDY14255 | Canola | nucleus | 24.23 | 22.83 |
| CDY53558 | Canola | nucleus | 30.38 | 22.64 |
| CDX97423 | Canola | nucleus | 24.23 | 22.58 |
| CDY19002 | Canola | nucleus | 24.23 | 21.5 |
| CDY69209 | Canola | nucleus | 25.38 | 21.22 |
| CDX81987 | Canola | nucleus | 25.38 | 21.09 |
| CDX89202 | Canola | nucleus | 23.46 | 20.82 |
| CDY08372 | Canola | nucleus | 11.15 | 12.34 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078HN45 | UniProt:A0A078HN45 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY38238 | ProteinID:CDY38238 | ProteinID:CDY38238.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00065576001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EE88EF | SEG:seg | : | : | : | : |
Description
BnaC05g17550DBnaC05g17550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HN45]
Coordinates
chrLK032419:-:126704..127879
Molecular Weight (calculated)
29319.3 Da
IEP (calculated)
5.904
GRAVY (calculated)
-0.658
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTMDYCNS KTFQQTDPFG GELMEALLPF IKSPSTDSPA SAFAFASYPD VCLTQPIPYV SSDLNQTHSY SNLLSPKPVP MKQTGSPPKP MKLYRGVRQR
101: HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDKAAYKL RGDFARLNFP NLRGEFGEYQ PLQSPVDDKL EAICKSLAET QKPTKKSSSR RRSSTAKQPE
201: EVKSEDYSSV VSPPSTESYG SPLSDLTFVD VEEQQQPWSV NFALEKYPSY EIDWDSILST
101: HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDKAAYKL RGDFARLNFP NLRGEFGEYQ PLQSPVDDKL EAICKSLAET QKPTKKSSSR RRSSTAKQPE
201: EVKSEDYSSV VSPPSTESYG SPLSDLTFVD VEEQQQPWSV NFALEKYPSY EIDWDSILST
001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
Arabidopsis Description
RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.