CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68032
CDX70957
CDX79244
CDX87480
CDX88414
CDX88828
CDX93236
CDX93238
CDY05245
CDY07031
CDY07638
CDY08064
CDY09093
CDY14636
CDY16586
CDY18844
CDY24708
CDY26847
CDY29955
CDY58342
CDY61778
CDY67137
CDY71585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78080.1	CDX68032	AT1G78080.1	19843165
AT1G78080.1	CDX79244	AT1G78080.1	19843165
AT1G78080.1	CDX87480	AT1G78080.1	19843165
AT1G78080.1	CDX88414	AT1G78080.1	19843165
AT1G78080.1	CDY14636	AT1G78080.1	19843165
AT1G78080.1	CDY26847	AT1G78080.1	19843165
AT1G78080.1	CDX93236	AT2G39760.1	19843165
AT1G78080.1	CDX93238	AT2G39760.1	19843165
AT1G78080.1	CDY07031	AT2G39760.1	19843165
AT1G78080.1	CDY07638	AT2G39760.1	19843165
AT1G78080.1	CDY61778	AT2G39760.1	19843165
AT1G78080.1	CDY29955	AT3G03740.1	19843165
AT1G78080.1	CDY67137	AT3G03740.1	19843165
AT1G78080.1	CDY05245	AT3G06190.1	19843165
AT1G78080.1	CDY08064	AT3G06190.1	19843165
AT1G78080.1	CDY18844	AT3G06190.1	19843165
AT1G78080.1	CDY24708	AT3G06190.1	19843165
AT1G78080.1	CDY58342	AT3G06190.1	19843165
AT1G78080.1	CDX70957	AT5G21010.1	19843165
AT1G78080.1	CDX88828	AT5G21010.1	19843165
AT1G78080.1	CDY09093	AT5G21010.1	19843165
AT1G78080.1	CDY16586	AT5G21010.1	19843165
AT1G78080.1	CDY71585	AT5G21010.1	19843165

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008343.1-P	Field mustard	nucleus	100.0	100.0
CDY14636	Canola	nucleus, plastid	77.17	96.0
CDX68032	Canola	nucleus	83.28	80.69
CDX79244	Canola	nucleus	84.57	78.74
CDX88414	Canola	nucleus	79.1	76.64
CDX87480	Canola	nucleus	67.2	76.56
AT1G78080.1	Thale cress	nucleus	79.1	73.65
CDY38238	Canola	nucleus	51.13	61.15
CDY21346	Canola	nucleus	50.48	60.38
Solyc04g072900.1.1	Tomato	nucleus	45.98	54.17
KRH16699	Soybean	nucleus	52.73	52.56
CDY31606	Canola	nucleus	43.09	51.54
CDX72672	Canola	nucleus	42.44	51.36
KRH18890	Soybean	nucleus	51.13	51.13
CDY08817	Canola	mitochondrion	19.94	50.41
CDX90362	Canola	nucleus	41.8	50.39
CDX69387	Canola	nucleus	42.44	50.0
CDY39455	Canola	nucleus	43.09	49.81
CDY42004	Canola	nucleus	41.8	49.24
Solyc12g056980.1.1	Tomato	nucleus	47.27	47.88
GSMUA_AchrUn_...	Banana	nucleus	42.12	47.64
GSMUA_Achr10P...	Banana	nucleus	43.73	46.26
CDY08816	Canola	nucleus	41.48	45.74
CDY14542	Canola	nucleus	40.84	45.04
CDY33983	Canola	nucleus	39.55	44.73
PGSC0003DMT400024508	Potato	nucleus	52.73	44.69
CDX89442	Canola	plastid	33.12	44.21
PGSC0003DMT400022023	Potato	nucleus	47.91	43.95
CDY25578	Canola	plastid	33.12	43.64
CDY31284	Canola	nucleus	38.59	43.17
CDX73367	Canola	nucleus	42.44	41.12
CDY48227	Canola	nucleus	42.12	40.81
CDY65537	Canola	mitochondrion	17.36	31.4
CDX83982	Canola	nucleus	18.01	30.94
CDX96845	Canola	nucleus	18.01	30.94
CDX88163	Canola	mitochondrion	17.36	30.86
CDY36551	Canola	nucleus	18.01	30.43
CDY19812	Canola	mitochondrion	17.36	30.17
CDY39637	Canola	nucleus	18.33	29.84
CDX87096	Canola	mitochondrion	17.36	29.83
CDY67940	Canola	nucleus	18.01	29.47
CDY46525	Canola	nucleus	27.01	29.37
CDY71425	Canola	nucleus	27.33	29.01
CDY05373	Canola	mitochondrion	17.04	28.8
CDY05479	Canola	mitochondrion	17.04	28.65
CDX80507	Canola	nucleus	17.04	28.04
CDY47850	Canola	nucleus	27.33	27.87
CDY19805	Canola	nucleus	16.4	27.72
CDX88176	Canola	nucleus	16.72	27.51
CDY68539	Canola	mitochondrion, nucleus	16.08	26.88
CDX69779	Canola	nucleus	16.08	26.74
CDX87089	Canola	nucleus	16.4	25.89
CDY14255	Canola	nucleus	20.9	23.55
CDY29884	Canola	nucleus	19.61	23.37
CDX97423	Canola	nucleus	20.9	23.3
CDY19002	Canola	nucleus	21.86	23.21
CDX81987	Canola	nucleus	23.15	23.0
CDY58717	Canola	nucleus	19.29	22.99
CDY53558	Canola	nucleus	25.4	22.64
CDX89202	Canola	nucleus	21.22	22.53
CDY69209	Canola	nucleus	22.51	22.51
CDY08372	Canola	nucleus	11.25	14.89

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	GO:A0A078GNU4	UniProt:A0A078GNU4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY26847	ProteinID:CDY26847	ProteinID:CDY26847.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00036510001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00025464B7	SEG:seg	:	:	:	:

Description

BnaA02g18720DBnaA02g18720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNU4]

Coordinates

chrLK032195:+:127550..129242

Molecular Weight (calculated)

34510.6 Da

IEP (calculated)

8.627

GRAVY (calculated)

-0.556

Length

311 amino acids

Sequence
(BLAST)

001: MEAAMNMYSS RTVHQSDSFG GGELMEALVP FIKSVSTSSS PPPPASASAF INPAASAFSL PTFPGYHPEH FMTQPFTYGS DLNQTGSSLI GLNNLSSSQI
101: HQIQSQIHHN HPLLRPKPLL MKQPGVAGSC FPAKPTKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDK AAYKLRGDHA RLNFPNLRHN
201: GSHIGGEFGE YKPLHSTVDA KLEAICQSMA ETQKQDKTAK ASKKRASTVK KTEKVDLSEK VSPVTEFVES AGSSPLSELT FADTEEQPRW NETFSLEKYP
301: SYEIDWDSIL S

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.