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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68032
CDX70957
CDX79244
CDX87480
CDX88414
CDX88828
CDX93236
CDX93238
CDY05245
CDY07031
CDY07638
CDY08064
CDY09093
CDY14636
CDY16586
CDY18844
CDY24708
CDY26847
CDY29955
CDY58342
CDY61778
CDY67137
CDY71585

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78080.1 CDX68032 AT1G78080.1 19843165
AT1G78080.1 CDX79244 AT1G78080.1 19843165
AT1G78080.1 CDX87480 AT1G78080.1 19843165
AT1G78080.1 CDX88414 AT1G78080.1 19843165
AT1G78080.1 CDY14636 AT1G78080.1 19843165
AT1G78080.1 CDY26847 AT1G78080.1 19843165
AT1G78080.1 CDX93236 AT2G39760.1 19843165
AT1G78080.1 CDX93238 AT2G39760.1 19843165
AT1G78080.1 CDY07031 AT2G39760.1 19843165
AT1G78080.1 CDY07638 AT2G39760.1 19843165
AT1G78080.1 CDY61778 AT2G39760.1 19843165
AT1G78080.1 CDY29955 AT3G03740.1 19843165
AT1G78080.1 CDY67137 AT3G03740.1 19843165
AT1G78080.1 CDY05245 AT3G06190.1 19843165
AT1G78080.1 CDY08064 AT3G06190.1 19843165
AT1G78080.1 CDY18844 AT3G06190.1 19843165
AT1G78080.1 CDY24708 AT3G06190.1 19843165
AT1G78080.1 CDY58342 AT3G06190.1 19843165
AT1G78080.1 CDX70957 AT5G21010.1 19843165
AT1G78080.1 CDX88828 AT5G21010.1 19843165
AT1G78080.1 CDY09093 AT5G21010.1 19843165
AT1G78080.1 CDY16586 AT5G21010.1 19843165
AT1G78080.1 CDY71585 AT5G21010.1 19843165
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88414 Canola nucleus 95.97 81.62
CDY14636 Canola nucleus, plastid 73.99 80.8
Bra015634.1-P Field mustard nucleus 96.7 80.49
CDX68032 Canola nucleus 79.49 67.6
CDY26847 Canola nucleus 76.56 67.2
CDX79244 Canola nucleus 80.22 65.57
AT1G78080.1 Thale cress nucleus 79.12 64.67
CDY38238 Canola nucleus 57.88 60.77
CDY21346 Canola nucleus 57.51 60.38
CDY08817 Canola mitochondrion 22.71 50.41
Solyc04g072900.1.1 Tomato nucleus 47.25 48.86
CDX72672 Canola nucleus 44.69 47.47
CDY31606 Canola nucleus 44.69 46.92
KRH16699 Soybean nucleus 53.48 46.79
Solyc12g056980.1.1 Tomato nucleus 51.65 45.93
CDX90362 Canola nucleus 43.22 45.74
CDY39455 Canola nucleus 45.05 45.72
CDX69387 Canola nucleus 43.96 45.45
KRH18890 Soybean nucleus 51.65 45.34
CDY42004 Canola nucleus 43.59 45.08
GSMUA_Achr10P... Banana nucleus 48.35 44.9
GSMUA_AchrUn_... Banana nucleus 45.05 44.73
CDX89442 Canola plastid 35.53 41.63
CDY25578 Canola plastid 35.53 41.1
PGSC0003DMT400022023 Potato nucleus 50.92 41.0
CDY08816 Canola nucleus 41.76 40.43
CDY33983 Canola nucleus 40.66 40.36
CDX73367 Canola nucleus 46.52 39.56
PGSC0003DMT400024508 Potato nucleus 53.11 39.51
CDY48227 Canola nucleus 46.15 39.25
CDY14542 Canola nucleus 40.29 39.01
CDY31284 Canola nucleus 39.56 38.85
CDX96845 Canola nucleus 21.25 32.04
CDX83982 Canola nucleus 21.25 32.04
CDY36551 Canola nucleus 21.25 31.52
CDY39637 Canola nucleus 21.61 30.89
CDY65537 Canola mitochondrion 19.41 30.81
CDY67940 Canola nucleus 21.25 30.53
CDX88163 Canola mitochondrion 19.41 30.29
CDY19812 Canola mitochondrion 19.41 29.61
CDX87096 Canola mitochondrion 19.41 29.28
CDX80507 Canola nucleus 19.78 28.57
CDY05373 Canola mitochondrion 19.05 28.26
CDY19805 Canola nucleus 19.05 28.26
CDY05479 Canola mitochondrion 19.05 28.11
CDX88176 Canola nucleus 19.41 28.04
CDY68539 Canola mitochondrion, nucleus 19.05 27.96
CDX69779 Canola nucleus 19.05 27.81
CDY46525 Canola nucleus 28.94 27.62
CDY71425 Canola nucleus 29.3 27.3
CDY47850 Canola nucleus 30.04 26.89
CDX87089 Canola nucleus 19.05 26.4
CDY53558 Canola nucleus 29.3 22.92
CDY14255 Canola nucleus 23.08 22.83
CDY29884 Canola nucleus 21.61 22.61
CDY58717 Canola nucleus 21.25 22.22
CDX97423 Canola nucleus 22.71 22.22
CDY19002 Canola nucleus 23.81 22.18
CDY69209 Canola nucleus 24.54 21.54
CDX89202 Canola nucleus 23.08 21.5
CDX81987 Canola nucleus 24.54 21.41
CDY08372 Canola nucleus 12.45 14.47
Protein Annotations
MapMan:15.5.7.2Gene3D:3.30.730.10GO:A0A078DE14InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfEnsemblPlants:CDX87480
ProteinID:CDX87480ProteinID:CDX87480.1InterPro:DNA-bd_dom_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00146466001InterPro:IPR001471InterPro:IPR036955PFAM:PF00847
PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31657PANTHER:PTHR31657:SF9SMART:SM00380SUPFAM:SSF54171
UniParc:UPI0004EE177FSEG:seg::::
Description
BnaA07g33930D
Coordinates
chrLK031850:-:823074..824874
Molecular Weight (calculated)
30297.4 Da
IEP (calculated)
6.725
GRAVY (calculated)
-0.658
Length
273 amino acids
Sequence
(BLAST)
001: MEAAMNMYNS ITFQQPDSFG GGELMEALVP YINSVSNSSP YPAQAHPLPP MHHQSHNNTF SNLLSPKPLL MKQTGATGSC FAYGAPAKPT KLYRGVRQRH
101: WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPN LRHNGSHIGG EFGEYKPLHS TVDAKLEAIC QSMAEAEKQG KTTTKASKKR
201: ASKTVSSPEK VKAEDNSNSV DESTPVTEFV ESAGSSPLSD LTFADTEEPP QWNETFSLEK YPSYEIDWDS ILS
Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)
001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
Arabidopsis Description
RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.