CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68032
CDX70957
CDX79244
CDX87480
CDX88414
CDX88828
CDX93236
CDX93238
CDY05245
CDY07031
CDY07638
CDY08064
CDY09093
CDY14636
CDY16586
CDY18844
CDY24708
CDY26847
CDY29955
CDY58342
CDY61778
CDY67137
CDY71585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78080.1	CDX68032	AT1G78080.1	19843165
AT1G78080.1	CDX79244	AT1G78080.1	19843165
AT1G78080.1	CDX87480	AT1G78080.1	19843165
AT1G78080.1	CDX88414	AT1G78080.1	19843165
AT1G78080.1	CDY14636	AT1G78080.1	19843165
AT1G78080.1	CDY26847	AT1G78080.1	19843165
AT1G78080.1	CDX93236	AT2G39760.1	19843165
AT1G78080.1	CDX93238	AT2G39760.1	19843165
AT1G78080.1	CDY07031	AT2G39760.1	19843165
AT1G78080.1	CDY07638	AT2G39760.1	19843165
AT1G78080.1	CDY61778	AT2G39760.1	19843165
AT1G78080.1	CDY29955	AT3G03740.1	19843165
AT1G78080.1	CDY67137	AT3G03740.1	19843165
AT1G78080.1	CDY05245	AT3G06190.1	19843165
AT1G78080.1	CDY08064	AT3G06190.1	19843165
AT1G78080.1	CDY18844	AT3G06190.1	19843165
AT1G78080.1	CDY24708	AT3G06190.1	19843165
AT1G78080.1	CDY58342	AT3G06190.1	19843165
AT1G78080.1	CDX70957	AT5G21010.1	19843165
AT1G78080.1	CDX88828	AT5G21010.1	19843165
AT1G78080.1	CDY09093	AT5G21010.1	19843165
AT1G78080.1	CDY16586	AT5G21010.1	19843165
AT1G78080.1	CDY71585	AT5G21010.1	19843165

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87480	Canola	nucleus	81.62	95.97
Bra015634.1-P	Field mustard	nucleus	96.88	94.82
CDY14636	Canola	nucleus, plastid	64.17	82.4
CDY26847	Canola	nucleus	76.64	79.1
CDX68032	Canola	nucleus	78.19	78.19
CDX79244	Canola	nucleus	79.44	76.35
AT1G78080.1	Thale cress	nucleus	77.57	74.55
CDY38238	Canola	nucleus	51.4	63.46
CDY21346	Canola	nucleus	51.09	63.08
Solyc04g072900.1.1	Tomato	nucleus	42.68	51.89
KRH16699	Soybean	nucleus	49.84	51.28
CDY08817	Canola	mitochondrion	19.31	50.41
KRH18890	Soybean	nucleus	48.29	49.84
CDX72672	Canola	nucleus	39.88	49.81
CDY31606	Canola	nucleus	39.88	49.23
CDX90362	Canola	nucleus	38.94	48.45
GSMUA_AchrUn_...	Banana	nucleus	41.43	48.36
CDY39455	Canola	nucleus	40.5	48.33
CDX69387	Canola	nucleus	39.56	48.11
Solyc12g056980.1.1	Tomato	nucleus	45.79	47.88
CDY42004	Canola	nucleus	39.25	47.73
GSMUA_Achr10P...	Banana	nucleus	43.61	47.62
PGSC0003DMT400022023	Potato	nucleus	46.42	43.95
PGSC0003DMT400024508	Potato	nucleus	50.16	43.87
CDX89442	Canola	plastid	31.46	43.35
CDY33983	Canola	nucleus	36.76	42.91
CDY08816	Canola	nucleus	37.69	42.91
CDY25578	Canola	plastid	31.46	42.8
CDY14542	Canola	nucleus	36.76	41.84
CDX73367	Canola	nucleus	41.74	41.74
CDY48227	Canola	nucleus	41.43	41.43
CDY31284	Canola	nucleus	35.83	41.37
CDX96845	Canola	nucleus	18.38	32.6
CDX83982	Canola	nucleus	18.38	32.6
CDY36551	Canola	nucleus	18.38	32.07
CDY39637	Canola	nucleus	18.69	31.41
CDY65537	Canola	mitochondrion	16.82	31.4
CDY67940	Canola	nucleus	18.38	31.05
CDX88163	Canola	mitochondrion	16.82	30.86
CDY19812	Canola	mitochondrion	16.82	30.17
CDX87096	Canola	mitochondrion	16.82	29.83
CDY46525	Canola	nucleus	26.48	29.72
CDY71425	Canola	nucleus	26.48	29.01
CDY05373	Canola	mitochondrion	16.51	28.8
CDY05479	Canola	mitochondrion	16.51	28.65
CDX80507	Canola	nucleus	16.82	28.57
CDY19805	Canola	nucleus	16.2	28.26
CDY47850	Canola	nucleus	26.79	28.2
CDX88176	Canola	nucleus	16.51	28.04
CDY68539	Canola	mitochondrion, nucleus	16.2	27.96
CDX69779	Canola	nucleus	16.2	27.81
CDX87089	Canola	nucleus	16.2	26.4
CDY53558	Canola	nucleus	26.17	24.07
CDY14255	Canola	nucleus	19.94	23.19
CDY19002	Canola	nucleus	20.87	22.87
CDY29884	Canola	nucleus	18.38	22.61
CDX97423	Canola	nucleus	19.63	22.58
CDY69209	Canola	nucleus	21.81	22.51
CDY58717	Canola	nucleus	18.07	22.22
CDX89202	Canola	nucleus	20.25	22.18
CDX81987	Canola	nucleus	21.5	22.04
CDY08372	Canola	nucleus	11.53	15.74

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	GO:A0A078DIQ5	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDX88414
ProteinID:CDX88414	ProteinID:CDX88414.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00147953001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EE9A00	SEG:seg	:	:	:	:

Description

BnaC06g38580D

Coordinates

chrLK031855:+:877994..879665

Molecular Weight (calculated)

35451.3 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.555

Length

321 amino acids

Sequence
(BLAST)

001: MEAAMNMYNS ITFQQPDSFG GGELMEALVP YISSVSNSSP YPASAFIQPT ASAFPPSLPT FPAYYPEDYS TFMTQPFTYG SDLHQTGSLT GLNHLSTPMH
101: HQSHNNTFSN LLSPKPLLMK QTGATGSCFA YDAPAKPTKL YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF DTAEEAALAY DKAAYKLRGD FARLNFPNLR
201: HNGSHIGGEF GEYKPLHSTV DAKLEAICQS MAEAEKQGKT TTKASKKRAS KTVSSPEKVK AEDNSNSVGG SPPVTEFVES AGSSPLSDLT FADTEELPQW
301: NETFSLEKYP SYEIDWDSIL S

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.