Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024358.1-P | Field mustard | nucleus | 86.88 | 86.88 |
| CDY08816 | Canola | nucleus | 86.52 | 86.52 |
| CDY33983 | Canola | nucleus | 76.24 | 78.18 |
| CDY31284 | Canola | nucleus | 74.11 | 75.18 |
| CDY08817 | Canola | mitochondrion | 32.27 | 73.98 |
| AT5G65130.2 | Thale cress | nucleus | 69.86 | 70.61 |
| CDX90362 | Canola | nucleus | 47.52 | 51.94 |
| CDY31606 | Canola | nucleus | 46.81 | 50.77 |
| CDX72672 | Canola | nucleus | 46.1 | 50.58 |
| CDY39455 | Canola | nucleus | 47.16 | 49.44 |
| CDX69387 | Canola | nucleus | 44.68 | 47.73 |
| CDY42004 | Canola | nucleus | 44.33 | 47.35 |
| CDX89442 | Canola | plastid | 38.3 | 46.35 |
| CDY25578 | Canola | plastid | 37.23 | 44.49 |
| CDY14636 | Canola | nucleus, plastid | 39.01 | 44.0 |
| CDY21346 | Canola | nucleus | 39.72 | 43.08 |
| CDY38238 | Canola | nucleus | 39.36 | 42.69 |
| CDY26847 | Canola | nucleus | 45.04 | 40.84 |
| CDX87480 | Canola | nucleus | 39.01 | 40.29 |
| CDX68032 | Canola | nucleus | 43.26 | 38.01 |
| CDX88414 | Canola | nucleus | 41.84 | 36.76 |
| CDX79244 | Canola | nucleus | 43.26 | 36.53 |
| CDY48227 | Canola | nucleus | 36.52 | 32.09 |
| CDX73367 | Canola | nucleus | 36.17 | 31.78 |
| CDX96845 | Canola | nucleus | 19.86 | 30.94 |
| CDX83982 | Canola | nucleus | 19.86 | 30.94 |
| CDY36551 | Canola | nucleus | 19.86 | 30.43 |
| CDY67940 | Canola | nucleus | 19.86 | 29.47 |
| CDY39637 | Canola | nucleus | 19.86 | 29.32 |
| CDY19812 | Canola | mitochondrion | 18.44 | 29.05 |
| CDX87096 | Canola | mitochondrion | 18.44 | 28.73 |
| CDX88163 | Canola | mitochondrion | 17.73 | 28.57 |
| CDY65537 | Canola | mitochondrion | 17.38 | 28.49 |
| CDY19805 | Canola | nucleus | 18.44 | 28.26 |
| CDY05373 | Canola | mitochondrion | 18.09 | 27.72 |
| CDY05479 | Canola | mitochondrion | 18.09 | 27.57 |
| CDX88176 | Canola | nucleus | 18.44 | 27.51 |
| CDX80507 | Canola | nucleus | 18.44 | 27.51 |
| CDY68539 | Canola | mitochondrion, nucleus | 18.09 | 27.42 |
| CDX69779 | Canola | nucleus | 18.09 | 27.27 |
| CDX87089 | Canola | nucleus | 18.44 | 26.4 |
| CDY46525 | Canola | nucleus | 26.6 | 26.22 |
| CDY71425 | Canola | nucleus | 26.6 | 25.6 |
| CDY47850 | Canola | nucleus | 27.66 | 25.57 |
| CDY53558 | Canola | nucleus | 28.37 | 22.92 |
| CDX97423 | Canola | nucleus | 21.63 | 21.86 |
| CDY14255 | Canola | nucleus | 21.28 | 21.74 |
| CDY58717 | Canola | nucleus | 19.86 | 21.46 |
| CDX81987 | Canola | nucleus | 23.4 | 21.09 |
| CDY29884 | Canola | nucleus | 19.5 | 21.07 |
| CDY19002 | Canola | nucleus | 21.63 | 20.82 |
| CDX89202 | Canola | nucleus | 21.63 | 20.82 |
| CDY69209 | Canola | nucleus | 22.34 | 20.26 |
| CDY08372 | Canola | nucleus | 10.28 | 12.34 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078FNV9 | UniProt:A0A078FNV9 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY14542 | ProteinID:CDY14542 | ProteinID:CDY14542.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00079266001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EED48B | SEG:seg | : | : | : | : |
Description
BnaC03g49170DBnaC03g49170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNV9]
Coordinates
chrLK032044:+:360310..361158
Molecular Weight (calculated)
31830.0 Da
IEP (calculated)
8.202
GRAVY (calculated)
-0.606
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIALNMNGY LEEFMKALEP FRKVTSSPSP SSSKPIPITP DNQTLPVCNQ TGPIGLNQLT PTQILQIQTE LHLRQNQARR GCSGHNVNVL NAKPTLMKKT
101: NVTKPAKLYR GIRQRHWGKW VAEIRLPKNR TRLWLGTFET AEEAALAYDQ AAHKIRGENA RLNFPNIARR GEYKKTLSPS VNAKIESICN SSELPMSELK
201: KPAETEEVFF GFHYTDPKVE QEREAPDEFG YGSGYSPESD ITLLDIISNE WMKEDGSFCM GLQKCPSFEI DWDAIDKLSG SI
101: NVTKPAKLYR GIRQRHWGKW VAEIRLPKNR TRLWLGTFET AEEAALAYDQ AAHKIRGENA RLNFPNIARR GEYKKTLSPS VNAKIESICN SSELPMSELK
201: KPAETEEVFF GFHYTDPKVE QEREAPDEFG YGSGYSPESD ITLLDIISNE WMKEDGSFCM GLQKCPSFEI DWDAIDKLSG SI
001: MAMALNMNAY VDEFMEALEP FMKVTSSSST SNSSNPKPLT PNFIPNNDQV LPVSNQTGPI GLNQLTPTQI LQIQTELHLR QNQSRRRAGS HLLTAKPTSM
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT5G65130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.