Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010657.1-P | Field mustard | nucleus | 91.45 | 95.35 |
| CDX90362 | Canola | nucleus | 90.71 | 94.57 |
| CDX72672 | Canola | nucleus | 84.39 | 88.33 |
| CDY42004 | Canola | nucleus | 85.13 | 86.74 |
| CDX69387 | Canola | nucleus | 84.39 | 85.98 |
| CDY31606 | Canola | nucleus | 81.04 | 83.85 |
| AT4G39780.1 | Thale cress | nucleus | 79.55 | 78.68 |
| CDX89442 | Canola | plastid | 51.67 | 59.66 |
| CDY25578 | Canola | plastid | 51.67 | 58.9 |
| CDY08817 | Canola | mitochondrion | 23.05 | 50.41 |
| CDY14542 | Canola | nucleus | 49.44 | 47.16 |
| CDY38238 | Canola | nucleus | 44.98 | 46.54 |
| CDY21346 | Canola | nucleus | 44.98 | 46.54 |
| CDY14636 | Canola | nucleus, plastid | 43.12 | 46.4 |
| CDY08816 | Canola | nucleus | 48.33 | 46.1 |
| Solyc04g054910.2.1 | Tomato | nucleus | 47.58 | 46.04 |
| CDY33983 | Canola | nucleus | 46.1 | 45.09 |
| CDX87480 | Canola | nucleus | 45.72 | 45.05 |
| CDY31284 | Canola | nucleus | 45.35 | 43.88 |
| KRG97594 | Soybean | nucleus | 49.81 | 43.37 |
| CDY26847 | Canola | nucleus | 49.81 | 43.09 |
| KRH31278 | Soybean | nucleus | 50.56 | 42.77 |
| CDX68032 | Canola | nucleus | 49.44 | 41.43 |
| CDX88414 | Canola | nucleus | 48.33 | 40.5 |
| CDX79244 | Canola | nucleus | 50.19 | 40.42 |
| PGSC0003DMT400053152 | Potato | nucleus | 52.04 | 37.84 |
| VIT_00s0662g00040.t01 | Wine grape | nucleus | 49.81 | 35.83 |
| CDY48227 | Canola | nucleus | 39.03 | 32.71 |
| CDX73367 | Canola | nucleus | 38.29 | 32.09 |
| CDY65537 | Canola | mitochondrion | 20.07 | 31.4 |
| CDX88163 | Canola | mitochondrion | 20.07 | 30.86 |
| CDY19812 | Canola | mitochondrion | 20.07 | 30.17 |
| CDX83982 | Canola | nucleus | 20.07 | 29.83 |
| CDX96845 | Canola | nucleus | 20.07 | 29.83 |
| CDX87096 | Canola | mitochondrion | 20.07 | 29.83 |
| CDY36551 | Canola | nucleus | 20.07 | 29.35 |
| CDY39637 | Canola | nucleus | 20.07 | 28.27 |
| CDY05373 | Canola | mitochondrion | 19.33 | 28.26 |
| CDY05479 | Canola | mitochondrion | 19.33 | 28.11 |
| CDY67940 | Canola | nucleus | 19.7 | 27.89 |
| CDX88176 | Canola | nucleus | 18.59 | 26.45 |
| CDX80507 | Canola | nucleus | 18.59 | 26.45 |
| CDY19805 | Canola | nucleus | 17.84 | 26.09 |
| CDY46525 | Canola | nucleus | 27.51 | 25.87 |
| CDY68539 | Canola | mitochondrion, nucleus | 17.84 | 25.81 |
| CDX69779 | Canola | nucleus | 17.84 | 25.67 |
| CDY71425 | Canola | nucleus | 27.51 | 25.26 |
| CDY14255 | Canola | nucleus | 25.65 | 25.0 |
| CDX97423 | Canola | nucleus | 25.65 | 24.73 |
| CDX87089 | Canola | nucleus | 17.84 | 24.37 |
| CDY47850 | Canola | nucleus | 27.51 | 24.26 |
| CDY53558 | Canola | nucleus | 31.23 | 24.07 |
| CDY29884 | Canola | nucleus | 23.05 | 23.75 |
| CDX89202 | Canola | nucleus | 25.65 | 23.55 |
| CDY19002 | Canola | nucleus | 25.65 | 23.55 |
| CDY58717 | Canola | nucleus | 22.68 | 23.37 |
| CDX81987 | Canola | nucleus | 25.65 | 22.04 |
| CDY69209 | Canola | nucleus | 24.91 | 21.54 |
| CDY08372 | Canola | nucleus | 9.29 | 10.64 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078HLW7 | UniProt:A0A078HLW7 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY39455 | ProteinID:CDY39455 | ProteinID:CDY39455.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00067929001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EDC891 | SEG:seg | : | : | : | : |
Description
BnaC03g60650DBnaC03g60650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLW7]
Coordinates
chrLK032448:-:32601..33762
Molecular Weight (calculated)
30417.7 Da
IEP (calculated)
4.931
GRAVY (calculated)
-0.559
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIDMFNSS TNLSDPFKEE LMKVLKPFTN SVSSLPPIPN SIFGFNQTTP LGLNQLTPYQ IHQIQNQLNQ RRNATISTLS PKPVPMKNMA AQKLYRGVRQ
101: RHWGKWVAEI RLPKNRTRLW LGTFNTAEEA AMAYDRAAYK LRGELARLNF PYIRHEYGDS RFKALHPSVE AKLEAICQSL GKTEDDDDLP CSETELFPPK
201: AEYQESECSW SLRADESLFS DESQVGSSSP GTFLDFSDSG FDDESGSFVL EKFPSVEIDW DAISKLSES
101: RHWGKWVAEI RLPKNRTRLW LGTFNTAEEA AMAYDRAAYK LRGELARLNF PYIRHEYGDS RFKALHPSVE AKLEAICQSL GKTEDDDDLP CSETELFPPK
201: AEYQESECSW SLRADESLFS DESQVGSSSP GTFLDFSDSG FDDESGSFVL EKFPSVEIDW DAISKLSES
001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
Arabidopsis Description
ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.