Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42004 | Canola | nucleus | 98.11 | 98.11 |
| CDX72672 | Canola | nucleus | 85.98 | 88.33 |
| CDY31606 | Canola | nucleus | 84.09 | 85.38 |
| CDY39455 | Canola | nucleus | 85.98 | 84.39 |
| CDX90362 | Canola | nucleus | 79.92 | 81.78 |
| AT4G39780.1 | Thale cress | nucleus | 81.06 | 78.68 |
| CDX89442 | Canola | plastid | 51.14 | 57.94 |
| CDY25578 | Canola | plastid | 51.14 | 57.2 |
| CDY08817 | Canola | mitochondrion | 21.97 | 47.15 |
| CDY14636 | Canola | nucleus, plastid | 43.94 | 46.4 |
| CDY21346 | Canola | nucleus | 44.32 | 45.0 |
| CDY38238 | Canola | nucleus | 44.32 | 45.0 |
| CDY14542 | Canola | nucleus | 47.73 | 44.68 |
| Solyc04g054910.2.1 | Tomato | nucleus | 46.97 | 44.6 |
| CDX87480 | Canola | nucleus | 45.45 | 43.96 |
| CDY08816 | Canola | nucleus | 46.59 | 43.62 |
| CDY33983 | Canola | nucleus | 45.08 | 43.27 |
| CDY26847 | Canola | nucleus | 50.0 | 42.44 |
| KRG97594 | Soybean | nucleus | 49.62 | 42.39 |
| CDY31284 | Canola | nucleus | 44.32 | 42.09 |
| KRH31278 | Soybean | nucleus | 48.86 | 40.57 |
| CDX68032 | Canola | nucleus | 49.24 | 40.5 |
| CDX88414 | Canola | nucleus | 48.11 | 39.56 |
| CDX79244 | Canola | nucleus | 50.0 | 39.52 |
| PGSC0003DMT400053152 | Potato | nucleus | 51.14 | 36.49 |
| VIT_00s0662g00040.t01 | Wine grape | nucleus | 50.0 | 35.29 |
| CDY48227 | Canola | nucleus | 39.39 | 32.4 |
| CDX73367 | Canola | nucleus | 38.26 | 31.46 |
| CDY65537 | Canola | mitochondrion | 20.08 | 30.81 |
| CDX88163 | Canola | mitochondrion | 20.08 | 30.29 |
| CDY19812 | Canola | mitochondrion | 20.08 | 29.61 |
| CDX83982 | Canola | nucleus | 20.08 | 29.28 |
| CDX87096 | Canola | mitochondrion | 20.08 | 29.28 |
| CDX96845 | Canola | nucleus | 20.08 | 29.28 |
| CDY36551 | Canola | nucleus | 20.08 | 28.8 |
| CDY05373 | Canola | mitochondrion | 19.7 | 28.26 |
| CDY05479 | Canola | mitochondrion | 19.7 | 28.11 |
| CDY39637 | Canola | nucleus | 20.08 | 27.75 |
| CDX80507 | Canola | nucleus | 19.32 | 26.98 |
| CDX88176 | Canola | nucleus | 19.32 | 26.98 |
| CDY68539 | Canola | mitochondrion, nucleus | 18.94 | 26.88 |
| CDY67940 | Canola | nucleus | 19.32 | 26.84 |
| CDX69779 | Canola | nucleus | 18.94 | 26.74 |
| CDY19805 | Canola | nucleus | 18.18 | 26.09 |
| CDY46525 | Canola | nucleus | 28.03 | 25.87 |
| CDY71425 | Canola | nucleus | 28.41 | 25.6 |
| CDX87089 | Canola | nucleus | 18.18 | 24.37 |
| CDY53558 | Canola | nucleus | 32.2 | 24.36 |
| CDY47850 | Canola | nucleus | 28.03 | 24.26 |
| CDY14255 | Canola | nucleus | 25.0 | 23.91 |
| CDX97423 | Canola | nucleus | 25.0 | 23.66 |
| CDY29884 | Canola | nucleus | 23.11 | 23.37 |
| CDY58717 | Canola | nucleus | 22.73 | 22.99 |
| CDX89202 | Canola | nucleus | 25.38 | 22.87 |
| CDY19002 | Canola | nucleus | 25.38 | 22.87 |
| CDX81987 | Canola | nucleus | 26.14 | 22.04 |
| CDY69209 | Canola | nucleus | 25.38 | 21.54 |
| CDY08372 | Canola | nucleus | 10.98 | 12.34 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078BYH1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX69387 |
| ProteinID:CDX69387 | ProteinID:CDX69387.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00131242001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EDE3BF |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g00660D
Coordinates
chrLK031789:+:4480479..4481615
Molecular Weight (calculated)
29954.0 Da
IEP (calculated)
4.836
GRAVY (calculated)
-0.658
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIDMFSSS TDHSDPFKEE LMKVLNPLTN SVSSLPPIPN TIFGFNQTAP LGLNQLTPYQ INQIQNQLNQ RHNSNISNLS PKPVPMKNMA VQKLYRGVRQ
101: RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA AMAYDQAAYQ LRGELARLNF PHMRHEYGYG GGDGSFKPLH PSVEAKLEAI CQSLRKTEDD DLPRSETELF
201: PPKAEEYQES EYGFLRADEN SFSYESQVES SSPESGFDEI GSFVLEKFPS VEIDWDAISK LSES
101: RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA AMAYDQAAYQ LRGELARLNF PHMRHEYGYG GGDGSFKPLH PSVEAKLEAI CQSLRKTEDD DLPRSETELF
201: PPKAEEYQES EYGFLRADEN SFSYESQVES SSPESGFDEI GSFVLEKFPS VEIDWDAISK LSES
001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
Arabidopsis Description
ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.