Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024358.1-P | Field mustard | nucleus | 99.65 | 99.65 |
| CDY14542 | Canola | nucleus | 86.52 | 86.52 |
| CDY33983 | Canola | nucleus | 74.82 | 76.73 |
| CDY31284 | Canola | nucleus | 72.34 | 73.38 |
| AT5G65130.2 | Thale cress | nucleus | 69.86 | 70.61 |
| CDY08817 | Canola | mitochondrion | 30.14 | 69.11 |
| CDX90362 | Canola | nucleus | 46.45 | 50.78 |
| CDY31606 | Canola | nucleus | 45.39 | 49.23 |
| CDX72672 | Canola | nucleus | 44.68 | 49.03 |
| CDY39455 | Canola | nucleus | 46.1 | 48.33 |
| CDX69387 | Canola | nucleus | 43.62 | 46.59 |
| CDY42004 | Canola | nucleus | 43.26 | 46.21 |
| CDX89442 | Canola | plastid | 37.94 | 45.92 |
| CDY14636 | Canola | nucleus, plastid | 40.07 | 45.2 |
| CDY21346 | Canola | nucleus | 41.13 | 44.62 |
| CDY38238 | Canola | nucleus | 40.78 | 44.23 |
| CDY25578 | Canola | plastid | 36.88 | 44.07 |
| CDX87480 | Canola | nucleus | 40.43 | 41.76 |
| CDY26847 | Canola | nucleus | 45.74 | 41.48 |
| CDX68032 | Canola | nucleus | 44.33 | 38.94 |
| CDX88414 | Canola | nucleus | 42.91 | 37.69 |
| CDX79244 | Canola | nucleus | 44.33 | 37.43 |
| CDY48227 | Canola | nucleus | 36.52 | 32.09 |
| CDX73367 | Canola | nucleus | 36.17 | 31.78 |
| CDX96845 | Canola | nucleus | 20.21 | 31.49 |
| CDX83982 | Canola | nucleus | 20.21 | 31.49 |
| CDY36551 | Canola | nucleus | 20.21 | 30.98 |
| CDY67940 | Canola | nucleus | 20.21 | 30.0 |
| CDY39637 | Canola | nucleus | 20.21 | 29.84 |
| CDX88163 | Canola | mitochondrion | 17.73 | 28.57 |
| CDY19812 | Canola | mitochondrion | 18.09 | 28.49 |
| CDY65537 | Canola | mitochondrion | 17.38 | 28.49 |
| CDX87096 | Canola | mitochondrion | 18.09 | 28.18 |
| CDY19805 | Canola | nucleus | 18.09 | 27.72 |
| CDY46525 | Canola | nucleus | 27.66 | 27.27 |
| CDY05373 | Canola | mitochondrion | 17.73 | 27.17 |
| CDY05479 | Canola | mitochondrion | 17.73 | 27.03 |
| CDY71425 | Canola | nucleus | 27.66 | 26.62 |
| CDX80507 | Canola | nucleus | 17.73 | 26.45 |
| CDX88176 | Canola | nucleus | 17.73 | 26.45 |
| CDY68539 | Canola | mitochondrion, nucleus | 17.38 | 26.34 |
| CDY47850 | Canola | nucleus | 28.37 | 26.23 |
| CDX69779 | Canola | nucleus | 17.38 | 26.2 |
| CDX87089 | Canola | nucleus | 18.09 | 25.89 |
| CDY53558 | Canola | nucleus | 29.43 | 23.78 |
| CDX97423 | Canola | nucleus | 22.7 | 22.94 |
| CDY14255 | Canola | nucleus | 22.34 | 22.83 |
| CDY19002 | Canola | nucleus | 22.7 | 21.84 |
| CDX89202 | Canola | nucleus | 22.7 | 21.84 |
| CDY29884 | Canola | nucleus | 19.86 | 21.46 |
| CDY58717 | Canola | nucleus | 19.86 | 21.46 |
| CDX81987 | Canola | nucleus | 23.4 | 21.09 |
| CDY69209 | Canola | nucleus | 22.34 | 20.26 |
| CDY08372 | Canola | nucleus | 11.35 | 13.62 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078F5Z2 | UniProt:A0A078F5Z2 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY08816 | ProteinID:CDY08816 | ProteinID:CDY08816.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00000777001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF2A1C | SEG:seg | : | : | : | : |
Description
BnaA06g24080DBnaA06g24080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5Z2]
Coordinates
chrLK031989:-:702041..702889
Molecular Weight (calculated)
31782.7 Da
IEP (calculated)
7.088
GRAVY (calculated)
-0.576
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIALNRNDY VQEFMKALEP FMKVTSSPSS PSSSKAIPIT HDNQTLPVCN QTGPIGLNQL TPTQILQIQT ELQLRQNQAR RGCSGHDLNV LNAKPTLMKK
101: TNVTKPAKLY RGIRQRHWGK WVAEIRLPKN RTRLWLGTFE TAEEAALAYD QAAHKIRGEN ARLNFPNIAF LGEYNQTLSP SVNAKIEAIC NSSELPPSKL
201: KKPAKTEEGF FGFHYMGHEL EQEREVPDNF GYRSGSSPES DLTLFDFSSE CVKEDESFCM GLQKCPSFEI DWDAIEKLSG SI
101: TNVTKPAKLY RGIRQRHWGK WVAEIRLPKN RTRLWLGTFE TAEEAALAYD QAAHKIRGEN ARLNFPNIAF LGEYNQTLSP SVNAKIEAIC NSSELPPSKL
201: KKPAKTEEGF FGFHYMGHEL EQEREVPDNF GYRSGSSPES DLTLFDFSSE CVKEDESFCM GLQKCPSFEI DWDAIEKLSG SI
001: MAMALNMNAY VDEFMEALEP FMKVTSSSST SNSSNPKPLT PNFIPNNDQV LPVSNQTGPI GLNQLTPTQI LQIQTELHLR QNQSRRRAGS HLLTAKPTSM
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT5G65130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.