Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80507 | Canola | nucleus | 96.83 | 96.83 |
| Bra009837.1-P | Field mustard | mitochondrion, nucleus | 86.24 | 95.88 |
| CDY19805 | Canola | nucleus | 83.07 | 85.33 |
| Solyc06g053240.2.1 | Tomato | nucleus | 13.76 | 83.87 |
| AT5G25390.2 | Thale cress | nucleus | 80.95 | 80.95 |
| CDX87089 | Canola | nucleus | 83.07 | 79.7 |
| CDY68539 | Canola | mitochondrion, nucleus | 62.96 | 63.98 |
| CDX69779 | Canola | nucleus | 62.43 | 63.1 |
| CDY36551 | Canola | nucleus | 55.03 | 56.52 |
| CDX96845 | Canola | nucleus | 53.97 | 56.35 |
| CDX83982 | Canola | nucleus | 53.97 | 56.35 |
| VIT_04s0008g05440.t01 | Wine grape | nucleus | 57.67 | 56.19 |
| CDY39637 | Canola | nucleus | 55.56 | 54.97 |
| KRH05157 | Soybean | nucleus | 55.56 | 52.76 |
| CDY67940 | Canola | nucleus | 52.91 | 52.63 |
| PGSC0003DMT400077702 | Potato | nucleus | 54.5 | 50.99 |
| CDY65537 | Canola | mitochondrion | 36.51 | 40.12 |
| CDX88163 | Canola | mitochondrion | 35.98 | 38.86 |
| CDY19812 | Canola | mitochondrion | 36.51 | 38.55 |
| CDX87096 | Canola | mitochondrion | 36.51 | 38.12 |
| CDY05479 | Canola | mitochondrion | 37.04 | 37.84 |
| CDY05373 | Canola | mitochondrion | 36.51 | 37.5 |
| CDY08817 | Canola | mitochondrion | 21.16 | 32.52 |
| CDX89442 | Canola | plastid | 25.93 | 21.03 |
| CDY14636 | Canola | nucleus, plastid | 27.51 | 20.8 |
| CDY25578 | Canola | plastid | 25.93 | 20.76 |
| CDX87480 | Canola | nucleus | 28.04 | 19.41 |
| CDX90362 | Canola | nucleus | 26.45 | 19.38 |
| CDX69387 | Canola | nucleus | 26.98 | 19.32 |
| CDY31606 | Canola | nucleus | 26.45 | 19.23 |
| CDX72672 | Canola | nucleus | 25.93 | 19.07 |
| CDY42004 | Canola | nucleus | 26.45 | 18.94 |
| CDY21346 | Canola | nucleus | 25.93 | 18.85 |
| CDY38238 | Canola | nucleus | 25.93 | 18.85 |
| CDY39455 | Canola | nucleus | 26.45 | 18.59 |
| CDY46525 | Canola | nucleus | 28.04 | 18.53 |
| CDY14542 | Canola | nucleus | 27.51 | 18.44 |
| CDY71425 | Canola | nucleus | 28.04 | 18.09 |
| CDY47850 | Canola | nucleus | 29.1 | 18.03 |
| CDY31284 | Canola | nucleus | 26.45 | 17.99 |
| CDY08816 | Canola | nucleus | 26.45 | 17.73 |
| CDY33983 | Canola | nucleus | 25.4 | 17.45 |
| CDX68032 | Canola | nucleus | 28.57 | 16.82 |
| CDY26847 | Canola | nucleus | 27.51 | 16.72 |
| CDX88414 | Canola | nucleus | 28.04 | 16.51 |
| CDY58717 | Canola | nucleus | 22.75 | 16.48 |
| CDY29884 | Canola | nucleus | 22.22 | 16.09 |
| CDY14255 | Canola | nucleus | 23.28 | 15.94 |
| CDX79244 | Canola | nucleus | 28.04 | 15.87 |
| CDX73367 | Canola | nucleus | 26.45 | 15.58 |
| CDY48227 | Canola | nucleus | 26.45 | 15.58 |
| CDX97423 | Canola | nucleus | 22.22 | 15.05 |
| CDY19002 | Canola | nucleus | 22.75 | 14.68 |
| CDX89202 | Canola | nucleus | 22.75 | 14.68 |
| CDX81987 | Canola | nucleus | 22.22 | 13.42 |
| CDY69209 | Canola | nucleus | 21.69 | 13.18 |
| CDY53558 | Canola | nucleus | 24.34 | 13.18 |
| CDY08372 | Canola | nucleus | 11.11 | 8.94 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:21.9.3.1 | Gene3D:3.30.730.10 | GO:A0A078DFY8 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX88176 | ProteinID:CDX88176 | ProteinID:CDX88176.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00147635001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 |
| PANTHER:PTHR31194:SF13 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EF122D | SEG:seg | : |
Description
BnaA06g27670D
Coordinates
chrLK031854:+:1176108..1177746
Molecular Weight (calculated)
21422.4 Da
IEP (calculated)
9.794
GRAVY (calculated)
-0.660
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHSKKFRGV RQRQWGSWVS EIRHPLFKRR VWLGTFNTAE EAAKAYDQAA VIMNGHNAKT NFPVIKSNDS DSSDINSLSR SPKWLSEHLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTTQN WVKLVELSDG VNARAGDVGI NKMKKKIDDV EEEDQVAMQM IEELLNWTCP ASASISGLH
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTTQN WVKLVELSDG VNARAGDVGI NKMKKKIDDV EEEDQVAMQM IEELLNWTCP ASASISGLH
001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV
Arabidopsis Description
SHN3SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.