Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 65.99 | 70.55 |
| GSMUA_Achr3P04360_001 | Banana | nucleus | 47.28 | 55.6 |
| CDY14636 | Canola | nucleus, plastid | 43.54 | 51.2 |
| CDY38238 | Canola | nucleus | 43.2 | 48.85 |
| GSMUA_Achr6P10440_001 | Banana | nucleus | 43.2 | 48.66 |
| AT1G22190.1 | Thale cress | nucleus | 43.2 | 48.66 |
| Bra031371.1-P | Field mustard | nucleus | 42.86 | 48.46 |
| CDY21346 | Canola | nucleus | 42.86 | 48.46 |
| CDX87480 | Canola | nucleus | 44.9 | 48.35 |
| KRH53092 | Soybean | nucleus | 46.6 | 45.36 |
| Solyc04g072900.1.1 | Tomato | nucleus | 39.8 | 44.32 |
| Bra008343.1-P | Field mustard | nucleus | 46.26 | 43.73 |
| CDY26847 | Canola | nucleus | 46.26 | 43.73 |
| GSMUA_Achr10P... | Banana | nucleus | 41.5 | 43.73 |
| KRH62373 | Soybean | nucleus | 46.6 | 43.63 |
| CDX88414 | Canola | nucleus | 47.62 | 43.61 |
| Bra015634.1-P | Field mustard | nucleus | 47.96 | 42.99 |
| KRH16699 | Soybean | nucleus | 44.22 | 41.67 |
| KRH18890 | Soybean | nucleus | 43.88 | 41.48 |
| GSMUA_Achr9P12950_001 | Banana | nucleus | 47.62 | 41.3 |
| Bra003659.1-P | Field mustard | nucleus | 44.22 | 40.88 |
| CDX68032 | Canola | nucleus | 44.22 | 40.5 |
| Solyc12g056980.1.1 | Tomato | nucleus | 42.18 | 40.39 |
| AT1G78080.1 | Thale cress | nucleus | 45.58 | 40.12 |
| GSMUA_Achr3P01650_001 | Banana | nucleus | 44.9 | 40.0 |
| CDX79244 | Canola | nucleus | 44.56 | 39.22 |
| PGSC0003DMT400024508 | Potato | nucleus | 48.3 | 38.69 |
| VIT_18s0001g05250.t01 | Wine grape | nucleus | 47.62 | 38.15 |
| PGSC0003DMT400022023 | Potato | nucleus | 43.2 | 37.46 |
| GSMUA_Achr9P13760_001 | Banana | mitochondrion | 18.03 | 34.87 |
| GSMUA_Achr7P19320_001 | Banana | nucleus | 17.35 | 33.33 |
| GSMUA_Achr6P05210_001 | Banana | nucleus | 19.73 | 31.87 |
| GSMUA_Achr5P22840_001 | Banana | mitochondrion, nucleus | 17.35 | 31.68 |
| GSMUA_Achr8P28500_001 | Banana | nucleus | 28.57 | 30.22 |
| GSMUA_Achr5P09470_001 | Banana | nucleus | 25.51 | 30.0 |
| GSMUA_Achr10P... | Banana | mitochondrion | 16.67 | 27.84 |
| GSMUA_Achr1P27990_001 | Banana | nucleus | 23.13 | 27.42 |
| GSMUA_Achr7P10160_001 | Banana | nucleus | 18.37 | 26.21 |
| GSMUA_Achr9P28540_001 | Banana | mitochondrion, nucleus | 17.35 | 25.63 |
| GSMUA_Achr10P... | Banana | nucleus | 27.89 | 23.84 |
| GSMUA_Achr4P02200_001 | Banana | mitochondrion | 17.69 | 22.32 |
| GSMUA_Achr4P26080_001 | Banana | nucleus | 28.91 | 20.94 |
| GSMUA_Achr7P16060_001 | Banana | mitochondrion | 16.67 | 20.76 |
| GSMUA_Achr8P14110_001 | Banana | nucleus | 24.83 | 18.34 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr10G30440_001 | EnsemblPlants:GSMUA_Achr10P30440_001 | EnsemblPlants:GSMUA_Achr10T30440_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0RMR8 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002967BA2 | SEG:seg |
Description
Putative DRF-like transcription factor DRFL2a [Source:GMGC_GENE;Acc:GSMUA_Achr10G30440_001]
Coordinates
chr10:-:32653533..32655093
Molecular Weight (calculated)
32107.8 Da
IEP (calculated)
8.600
GRAVY (calculated)
-0.506
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAIDMYNR NPFTTADPFD EELMKALEPF MTSASASSPL PPLPPPPPPP PPSSTSSTTT LTYSYPSLTS TLPPSTFSSS PRFSTPSSLQ NPNLGCYSLQ
101: NPTRFCSLDR LGVGSVGRLM KHTGSPAAPK PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGDFARLNF PNLRHAAAAA
201: PGPLLSTVDA KLQALCQGLA NSSKSKKRSS PLPSSTLKPI TDSSEGEDSS CSPPVLEMQH LDFTEAPWDE SETFMLQKRP SWEIDWDSIL SSSS
101: NPTRFCSLDR LGVGSVGRLM KHTGSPAAPK PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGDFARLNF PNLRHAAAAA
201: PGPLLSTVDA KLQALCQGLA NSSKSKKRSS PLPSSTLKPI TDSSEGEDSS CSPPVLEMQH LDFTEAPWDE SETFMLQKRP SWEIDWDSIL SSSS
001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
Arabidopsis Description
RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.