Factsheet for GSMUA_Achr3P01650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P10440_001	Banana	nucleus	60.3	76.25
GSMUA_Achr10P...	Banana	nucleus	56.97	67.38
GSMUA_Achr3P04360_001	Banana	nucleus	40.91	54.0
GSMUA_AchrUn_...	Banana	nucleus	39.7	47.64
GSMUA_Achr9P12950_001	Banana	nucleus	46.97	45.72
GSMUA_Achr10P...	Banana	nucleus	40.0	44.9
Bra040381.1-P	Field mustard	nucleus	38.48	39.56
CDX73367	Canola	nucleus	38.48	39.56
CDY48227	Canola	nucleus	38.48	39.56
AT1G36060.1	Thale cress	nucleus	36.67	38.53
GSMUA_Achr7P19320_001	Banana	nucleus	15.15	32.68
GSMUA_Achr9P13760_001	Banana	mitochondrion	14.55	31.58
GSMUA_Achr6P05210_001	Banana	nucleus	15.76	28.57
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	13.64	27.95
GSMUA_Achr8P28500_001	Banana	nucleus	23.33	27.7
GSMUA_Achr10P...	Banana	mitochondrion	14.24	26.7
GSMUA_Achr1P27990_001	Banana	nucleus	20.0	26.61
GSMUA_Achr5P09470_001	Banana	nucleus	19.39	25.6
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	14.85	24.62
GSMUA_Achr7P10160_001	Banana	nucleus	15.15	24.27
GSMUA_Achr4P26080_001	Banana	nucleus	28.48	23.15
GSMUA_Achr10P...	Banana	nucleus	23.03	22.09
GSMUA_Achr4P02200_001	Banana	mitochondrion	15.15	21.46
GSMUA_Achr8P14110_001	Banana	nucleus	25.15	20.85
GSMUA_Achr7P16060_001	Banana	mitochondrion	14.55	20.34

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G01650_001	EnsemblPlants:GSMUA_Achr3P01650_001	EnsemblPlants:GSMUA_Achr3T01650_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SAY3	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002965B7E	SEG:seg

Description

Putative Ethylene-responsive transcription factor RAP2-4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01650_001]

Coordinates

chr3:+:1111536..1113206

Molecular Weight (calculated)

36432.2 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.607

Length

330 amino acids

Sequence
(BLAST)

001: MAAAMDVYSS MPGSSSSDPL MEALDPFIKG APTSCYPSSS SFASSESFCY PSSSPVSPFS PYLHQDPSFD PSLLSESSYE MPPQHLLNQK DDFLGCLSSV
101: GFSYLFPAHI QQIRAQFQYQ QQLMAAASER RNLGNADPLA ARRRPMKHAG SPPSPPKPTK LFRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA
201: YDRAAFELRG DAARLNFPEL RRNGSHMGPP LHSSVDAKLQ TIYDTMANSQ KPKSALPGSA TTEEPGTSSE DNKSESSSSL EEDEPCSGSS AVSAMQHLDF
301: SEAPWDESES FVLRKYPSWE IDWDSILSSD

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.