Factsheet for Solyc04g072900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009060.2.1
Solyc01g080250.2.1
Solyc04g072900.1.1
Solyc05g052960.2.1
Solyc11g072070.1.1
Solyc12g056980.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22190.1	Solyc05g052960.2.1	AT2G39760.1	19843165
AT1G78080.1	Solyc04g072900.1.1	AT1G78080.1	19843165
AT1G78080.1	Solyc12g056980.1.1	AT1G78080.1	19843165
AT1G78080.1	Solyc05g052960.2.1	AT2G39760.1	19843165
AT1G78080.1	Solyc01g080250.2.1	AT3G06190.1	19843165
AT1G78080.1	Solyc01g009060.2.1	AT3G43700.1	19843165
AT1G78080.1	Solyc11g072070.1.1	AT3G43700.1	19843165
AT1G78080.1	Solyc01g009060.2.1	AT5G21010.1	19843165
AT1G78080.1	Solyc11g072070.1.1	AT5G21010.1	19843165

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024508	Potato	nucleus	97.35	70.03
Solyc06g053240.2.1	Tomato	nucleus	6.44	54.84
Solyc12g056980.1.1	Tomato	nucleus	61.36	52.77
CDY14636	Canola	nucleus, plastid	46.21	48.8
Bra031371.1-P	Field mustard	nucleus	47.73	48.46
CDY21346	Canola	nucleus	47.73	48.46
CDY38238	Canola	nucleus	47.35	48.08
KRH53092	Soybean	nucleus	54.92	48.01
AT1G22190.1	Thale cress	nucleus	47.35	47.89
CDX87480	Canola	nucleus	48.86	47.25
KRH62373	Soybean	nucleus	54.92	46.18
CDY26847	Canola	nucleus	54.17	45.98
Bra008343.1-P	Field mustard	nucleus	54.17	45.98
Solyc04g054910.2.1	Tomato	nucleus	47.73	45.32
Bra003659.1-P	Field mustard	nucleus	54.55	45.28
KRH16699	Soybean	nucleus	53.03	44.87
CDX68032	Canola	nucleus	54.17	44.55
AT1G78080.1	Thale cress	nucleus	55.68	44.01
CDX79244	Canola	nucleus	54.92	43.41
KRH18890	Soybean	nucleus	50.38	42.77
CDX88414	Canola	nucleus	51.89	42.68
GSMUA_AchrUn_...	Banana	nucleus	44.32	42.55
VIT_18s0001g05250.t01	Wine grape	nucleus	59.09	42.51
Bra015634.1-P	Field mustard	nucleus	52.27	42.07
GSMUA_Achr10P...	Banana	nucleus	44.32	39.8
Solyc03g117130.2.1	Tomato	mitochondrion, nucleus	20.45	33.33
Solyc06g068360.2.1	Tomato	mitochondrion, nucleus	19.32	28.18
Solyc08g082210.2.1	Tomato	nucleus	28.03	28.03
Solyc06g065820.2.1	Tomato	mitochondrion	19.7	25.49
Solyc03g116610.2.1	Tomato	nucleus	19.32	25.25
Solyc12g009490.1.1	Tomato	nucleus	19.7	23.42
Solyc09g091950.1.1	Tomato	extracellular, nucleus	32.58	20.53
Solyc07g054220.1.1	Tomato	nucleus	27.65	18.72
Solyc12g013660.1.1	Tomato	nucleus	21.97	16.43

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:AF506825	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9
UniProt:Q8GZE8	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc04g072900.1	EnsemblPlants:Solyc04g072900.1.1	UniParc:UPI00000ADCE8
SEG:seg	:	:	:	:	:

Description

Dehydration-responsive element binding protein 3 [Source:UniProtKB/TrEMBL;Acc:Q8GZE8]

Coordinates

chr4:+:59868088..59868882

Molecular Weight (calculated)

29535.9 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.697

Length

264 amino acids

Sequence
(BLAST)

001: MNSQIFSTGF SGYGMEQQGS IGLNQLTPIQ IQQIQAQINF QNQQQQQQQQ MMLQTAHHAS TMNFLAPKPV PMKQSGSPPK PTKLYRGVRQ RHWGKWVAEI
101: RLPKNRTRLW LGTFDTAEEA ALAYDKAAYM LRGDFARLNF PQLRHNGNLI GGDFGEYNPL HSSVDAKLKD ICQSLAQGKS IDSKKKKTKG LSAEKAAVVK
201: MEEEESKTAE VGSESDGSHS GSGGSSPVTE LIFPEFTEEE PTWDMSENFL LQKYPSHEID WASL

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.