Factsheet for Solyc03g116610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001703	Potato	nucleus	95.54	93.69
Solyc06g053240.2.1	Tomato	nucleus	12.38	80.65
CDY36551	Canola	nucleus	63.37	69.57
CDY39637	Canola	nucleus	64.85	68.59
CDX83982	Canola	nucleus	61.39	68.51
CDX96845	Canola	nucleus	61.39	68.51
GSMUA_Achr6P05210_001	Banana	nucleus	60.89	67.58
Bra026140.1-P	Field mustard	nucleus	64.36	65.66
CDY67940	Canola	nucleus	60.89	64.74
AT1G15360.1	Thale cress	nucleus	63.37	64.32
Bra016663.1-P	Field mustard	nucleus	62.87	63.5
Bra026770.1-P	Field mustard	nucleus	50.99	60.23
TraesCS7B01G277800.1	Wheat	nucleus	62.38	56.0
Zm00001d046501_P001	Maize	nucleus	59.9	55.76
TraesCS7A01G376300.1	Wheat	nucleus	62.38	55.51
TraesCS7D01G372700.1	Wheat	nucleus	62.38	55.51
Solyc12g009490.1.1	Tomato	nucleus	58.91	53.6
EER90018	Sorghum	nucleus	61.39	52.77
Zm00001d036889_P001	Maize	nucleus	58.42	51.3
Os06t0604000-02	Rice	nucleus	60.89	50.62
Solyc03g117130.2.1	Tomato	mitochondrion, nucleus	33.66	41.98
Solyc06g068360.2.1	Tomato	mitochondrion, nucleus	34.16	38.12
Solyc06g065820.2.1	Tomato	mitochondrion	32.67	32.35
Solyc04g072900.1.1	Tomato	nucleus	25.25	19.32
Solyc08g082210.2.1	Tomato	nucleus	24.26	18.56
Solyc04g054910.2.1	Tomato	nucleus	24.75	17.99
Solyc12g056980.1.1	Tomato	nucleus	24.75	16.29
Solyc09g091950.1.1	Tomato	extracellular, nucleus	26.24	12.65
Solyc07g054220.1.1	Tomato	nucleus	23.27	12.05
Solyc12g013660.1.1	Tomato	nucleus	19.31	11.05

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414
GO:GO:0009628	GO:GO:0009987	GO:GO:0010143	GO:GO:0010166	GO:GO:0043565	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4BLG3	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF24	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc03g116610.2	EnsemblPlants:Solyc03g116610.2.1
UniParc:UPI0002768F2B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:65951898..65952997

Molecular Weight (calculated)

22744.0 Da

IEP (calculated)

8.859

GRAVY (calculated)

-0.626

Length

202 amino acids

Sequence
(BLAST)

001: MVQAKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE EAARAYDEAA VLMSGRNAKT NFAVQAMDEN KKDNYKSNNS TLSGSSSSLS AILSAKLRKS
101: CKSPSPSLTC LRLDTESSNI GVWQKRAGAR PDSSWVMTVE FGKKKMINDN EHIIIPDENV TSSSTFLSQD NSIEIEQGKE CGVMNEEERM ALQMIEELLN
201: RN

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.