Factsheet for Bra026140.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36551	Canola	nucleus	90.91	97.83
CDY39637	Canola	nucleus	90.91	94.24
Bra016663.1-P	Field mustard	nucleus	89.9	89.0
AT1G15360.1	Thale cress	nucleus	88.38	87.94
Bra026770.1-P	Field mustard	nucleus	74.24	85.96
GSMUA_Achr6P05210_001	Banana	nucleus	61.62	67.03
PGSC0003DMT400001703	Potato	nucleus	67.17	64.56
Solyc03g116610.2.1	Tomato	nucleus	65.66	64.36
Zm00001d046501_P001	Maize	nucleus	63.13	57.6
TraesCS7B01G277800.1	Wheat	nucleus	64.65	56.89
TraesCS7A01G376300.1	Wheat	nucleus	64.65	56.39
TraesCS7D01G372700.1	Wheat	nucleus	64.65	56.39
Bra008985.1-P	Field mustard	nucleus	52.53	55.62
Bra036543.1-P	Field mustard	nucleus	51.01	55.19
EER90018	Sorghum	nucleus	64.65	54.47
Os06t0604000-02	Rice	nucleus	65.15	53.09
Zm00001d036889_P001	Maize	nucleus	61.11	52.61
Bra009837.1-P	Field mustard	mitochondrion, nucleus	41.41	48.24
Bra036536.1-P	Field mustard	mitochondrion	38.38	42.46
Bra020490.1-P	Field mustard	mitochondrion	37.37	42.29
Bra009824.1-P	Field mustard	mitochondrion	38.38	39.58
Bra024357.1-P	Field mustard	mitochondrion	21.72	34.96
Bra030255.1-P	Field mustard	plastid	25.25	21.19
Bra031371.1-P	Field mustard	nucleus	27.27	20.77
Bra010657.1-P	Field mustard	nucleus	26.26	20.16
Bra024358.1-P	Field mustard	nucleus	28.28	19.86
Bra031880.1-P	Field mustard	nucleus	27.78	19.86
Bra017879.1-P	Field mustard	nucleus	25.76	19.62
Bra011833.1-P	Field mustard	nucleus	27.27	19.57
Bra024222.1-P	Field mustard	nucleus	21.72	18.86
Bra003659.1-P	Field mustard	nucleus	28.79	17.92
Bra027697.1-P	Field mustard	nucleus	27.78	17.8
Bra008343.1-P	Field mustard	nucleus	27.78	17.68
Bra015634.1-P	Field mustard	nucleus	29.29	17.68
Bra027736.1-P	Field mustard	nucleus	26.77	17.38
Bra040381.1-P	Field mustard	nucleus	25.76	15.89
Bra010383.1-P	Field mustard	nucleus	21.21	15.22
Bra026280.1-P	Field mustard	nucleus	22.22	15.02
Bra031146.1-P	Field mustard	nucleus	21.72	13.83
Bra032724.1-P	Field mustard	nucleus	24.24	13.71

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlantsGene:Bra026140	EnsemblPlants:Bra026140.1	EnsemblPlants:Bra026140.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EBI1	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF24	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000253F03E	SEG:seg	:	:	:

Description

AT1G15360 (E=3e-064) SHN1, WIN1 | SHN1 (SHINE 1); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA06:+:5902222..5903028

Molecular Weight (calculated)

21194.7 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.601

Length

198 amino acids

Sequence
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFSLNNNNNT GDTSEGKTDI SSSSSSSSSL STILSAKLRK
101: CCKSPSPSLT CLRLDTASSH IGVWQKRAGS KSDSSWVMTV ELGPASSSQE PTKNASQDDV GPATEVGGGG GGGGGEEGVM DEEEKVALQM IEELLNTN

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.