Factsheet for Bra024357.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08817	Canola	mitochondrion	100.0	100.0
Bra031880.1-P	Field mustard	nucleus	69.11	30.69
Bra024358.1-P	Field mustard	nucleus	69.11	30.14
AT5G65130.2	Thale cress	nucleus	68.29	30.11
Bra030255.1-P	Field mustard	plastid	52.03	27.12
Bra017879.1-P	Field mustard	nucleus	51.22	24.23
Bra031371.1-P	Field mustard	nucleus	51.22	24.23
Bra010657.1-P	Field mustard	nucleus	49.59	23.64
Bra011833.1-P	Field mustard	nucleus	52.03	23.19
Bra024222.1-P	Field mustard	nucleus	41.46	22.37
Bra008985.1-P	Field mustard	nucleus	33.33	21.93
Bra036543.1-P	Field mustard	nucleus	32.52	21.86
Bra026140.1-P	Field mustard	nucleus	34.96	21.72
Bra020490.1-P	Field mustard	mitochondrion	30.89	21.71
Bra036536.1-P	Field mustard	mitochondrion	30.89	21.23
Bra016663.1-P	Field mustard	nucleus	34.15	21.0
Bra010383.1-P	Field mustard	nucleus	45.53	20.29
Bra008343.1-P	Field mustard	nucleus	50.41	19.94
Bra003659.1-P	Field mustard	nucleus	51.22	19.81
Bra009824.1-P	Field mustard	mitochondrion	30.89	19.79
Bra015634.1-P	Field mustard	nucleus	50.41	18.9
Bra026280.1-P	Field mustard	nucleus	43.9	18.43
Bra040381.1-P	Field mustard	nucleus	47.97	18.38
Bra026770.1-P	Field mustard	nucleus	21.95	15.79
Bra031146.1-P	Field mustard	nucleus	39.84	15.76
Bra027736.1-P	Field mustard	nucleus	39.02	15.74
Bra027697.1-P	Field mustard	nucleus	38.21	15.21
Bra032724.1-P	Field mustard	nucleus	42.28	14.86
Bra009837.1-P	Field mustard	mitochondrion, nucleus	20.33	14.71

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra024357
EnsemblPlants:Bra024357.1	EnsemblPlants:Bra024357.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4E6F3	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000253F4F3	SEG:seg	:	:	:	:

Description

AT5G65130 (E=2e-025) | AP2 domain-containing transcription factor, putative

Coordinates

chrA06:+:15148450..15149119

Molecular Weight (calculated)

14458.3 Da

IEP (calculated)

10.874

GRAVY (calculated)

-0.876

Length

123 amino acids

Sequence
(BLAST)

001: MKKANVTRPV KLYRGVRQRQ WGKWVAEIRL PKHRTRLWLG TFKSAEEAAL AYDQAAHKIR GDNTRLNFPD IASRNRRKQW NGSLVFYYTV PKLEQEREIP
101: DSSGYGSPES NITMLDFSSQ WMK

Best Arabidopsis Sequence Match ( AT5G65130.2 )
(BLAST)

001: MAMALNMNAY VDEFMEALEP FMKVTSSSST SNSSNPKPLT PNFIPNNDQV LPVSNQTGPI GLNQLTPTQI LQIQTELHLR QNQSRRRAGS HLLTAKPTSM
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT5G65130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.