Factsheet for Bra031880.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31284	Canola	nucleus	99.64	99.28
Bra024358.1-P	Field mustard	nucleus	74.37	73.05
Bra024357.1-P	Field mustard	mitochondrion	30.69	69.11
AT5G65130.2	Thale cress	nucleus	69.31	68.82
Bra017879.1-P	Field mustard	nucleus	44.04	46.92
Bra010657.1-P	Field mustard	nucleus	43.68	46.9
Bra011833.1-P	Field mustard	nucleus	44.4	44.57
Bra030255.1-P	Field mustard	plastid	36.1	42.37
Bra031371.1-P	Field mustard	nucleus	37.18	39.62
Bra008343.1-P	Field mustard	nucleus	43.68	38.91
Bra003659.1-P	Field mustard	nucleus	42.24	36.79
Bra015634.1-P	Field mustard	nucleus	42.24	35.67
Bra040381.1-P	Field mustard	nucleus	34.66	29.91
Bra020490.1-P	Field mustard	mitochondrion	18.77	29.71
Bra036536.1-P	Field mustard	mitochondrion	18.77	29.05
Bra026140.1-P	Field mustard	nucleus	19.86	27.78
Bra016663.1-P	Field mustard	nucleus	19.86	27.5
Bra036543.1-P	Field mustard	nucleus	18.05	27.32
Bra008985.1-P	Field mustard	nucleus	18.41	27.27
Bra009824.1-P	Field mustard	mitochondrion	18.77	27.08
Bra027736.1-P	Field mustard	nucleus	27.44	24.92
Bra027697.1-P	Field mustard	nucleus	27.44	24.6
Bra024222.1-P	Field mustard	nucleus	19.13	23.25
Bra032724.1-P	Field mustard	nucleus	28.88	22.86
Bra010383.1-P	Field mustard	nucleus	21.66	21.74
Bra026770.1-P	Field mustard	nucleus	13.36	21.64
Bra026280.1-P	Field mustard	nucleus	22.74	21.5
Bra009837.1-P	Field mustard	mitochondrion, nucleus	12.64	20.59
Bra031146.1-P	Field mustard	nucleus	22.74	20.26

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra031880	EnsemblPlants:Bra031880.1
EnsemblPlants:Bra031880.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4ESV0	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00025468FA	SEG:seg

Description

AT5G65130 (E=2e-084) | AP2 domain-containing transcription factor, putative

Coordinates

chrA02:+:27319222..27320055

Molecular Weight (calculated)

31534.2 Da

IEP (calculated)

8.921

GRAVY (calculated)

-0.708

Length

277 amino acids

Sequence
(BLAST)

001: MEVALNMNGY TEEFMQALES FMKVTSSSSS SSSSPSSSKQ EQLTLNNQTG PIGLNQLTPI QILQIQRELH LRQNQTRRRG GSAHNLHLLN AKPTLMKKTD
101: VTRPVKLHRG VRQRHWGKWV AEIRLPKTRT RLWLGTFETA DEAALAYDQA ARKIRGENAR LNFPNNKEYK ETLSPTVNAK IASIFNSSDL PMHELKKPAK
201: TEEGFFGFQY TGPKPDQERE FPDIFGYESG SSHESNITLL NFSSEWIKEN ESFCIGLQKY PSLEIDWEAI DKLSESV

Best Arabidopsis Sequence Match ( AT5G65130.2 )
(BLAST)

001: MAMALNMNAY VDEFMEALEP FMKVTSSSST SNSSNPKPLT PNFIPNNDQV LPVSNQTGPI GLNQLTPTQI LQIQTELHLR QNQSRRRAGS HLLTAKPTSM
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT5G65130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.