Factsheet for Bra017879.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31606	Canola	nucleus	99.23	99.23
Bra011833.1-P	Field mustard	nucleus	88.46	83.33
Bra010657.1-P	Field mustard	nucleus	77.69	78.29
AT4G39780.1	Thale cress	nucleus	80.38	76.84
Bra030255.1-P	Field mustard	plastid	51.54	56.78
Bra024357.1-P	Field mustard	mitochondrion	24.23	51.22
Bra031371.1-P	Field mustard	nucleus	45.77	45.77
Solyc04g054910.2.1	Tomato	nucleus	48.46	45.32
Bra024358.1-P	Field mustard	nucleus	48.85	45.04
Bra031880.1-P	Field mustard	nucleus	46.92	44.04
KRG97594	Soybean	nucleus	51.15	43.04
Bra008343.1-P	Field mustard	nucleus	50.77	42.44
KRH31278	Soybean	nucleus	50.77	41.51
Bra003659.1-P	Field mustard	nucleus	49.62	40.57
Bra015634.1-P	Field mustard	nucleus	49.23	39.02
PGSC0003DMT400053152	Potato	nucleus	53.08	37.3
VIT_00s0662g00040.t01	Wine grape	nucleus	50.77	35.29
Bra040381.1-P	Field mustard	nucleus	39.62	32.09
Bra020490.1-P	Field mustard	mitochondrion	19.62	29.14
Bra036536.1-P	Field mustard	mitochondrion	20.0	29.05
Bra009824.1-P	Field mustard	mitochondrion	19.62	26.56
Bra024222.1-P	Field mustard	nucleus	23.08	26.32
Bra026140.1-P	Field mustard	nucleus	19.62	25.76
Bra008985.1-P	Field mustard	nucleus	18.46	25.67
Bra016663.1-P	Field mustard	nucleus	19.62	25.5
Bra036543.1-P	Field mustard	nucleus	17.69	25.14
Bra010383.1-P	Field mustard	nucleus	26.15	24.64
Bra032724.1-P	Field mustard	nucleus	32.31	24.0
Bra027697.1-P	Field mustard	nucleus	28.46	23.95
Bra027736.1-P	Field mustard	nucleus	27.69	23.61
Bra026280.1-P	Field mustard	nucleus	26.54	23.55
Bra031146.1-P	Field mustard	nucleus	25.77	21.54
Bra009837.1-P	Field mustard	mitochondrion, nucleus	13.08	20.0
Bra026770.1-P	Field mustard	nucleus	12.31	18.71

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra017879	EnsemblPlants:Bra017879.1
EnsemblPlants:Bra017879.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DMZ2	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002540DD2	SEG:seg

Description

AT4G39780 (E=7e-102) | AP2 domain-containing transcription factor, putative

Coordinates

chrA03:-:31190884..31191666

Molecular Weight (calculated)

29153.5 Da

IEP (calculated)

5.041

GRAVY (calculated)

-0.475

Length

260 amino acids

Sequence
(BLAST)

001: MAAIDMFNSS TDLSDPLKEE LMKALKPSLP PVPNTIFGFN QTAPLGLNQL TPYQIHQIQN QLNQRRSTTI SNLSPKPVPM KNMTVHKLYR GVRQRHWGKW
101: VAEIRLPKNR TRLWLGTFDT AEEAAMAYDQ AAYKLRGELA RLNLPHTRRE CGYGGGDESF KPLHPSVEAK LEAICQSLVK TEDLDLPCSE TELFLPPKTE
201: YEENTFSDES QVGSSSPESG VTTAFLGFLD SGFDEIGSFV LEKFPSVEID WDAISKLSES

Best Arabidopsis Sequence Match ( AT4G39780.1 )
(BLAST)

001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES

Arabidopsis Description

ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.