Factsheet for Bra032724.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53558	Canola	nucleus	97.71	97.99
AT4G13620.1	Thale cress	nucleus	81.14	73.2
PGSC0003DMT400080372	Potato	nucleus	31.43	42.64
Bra024357.1-P	Field mustard	mitochondrion	14.86	42.28
VIT_05s0029g00140.t01	Wine grape	nucleus	40.86	35.4
KRH34596	Soybean	nucleus	37.14	33.59
GSMUA_Achr8P28500_001	Banana	nucleus	26.0	32.73
Solyc09g091950.1.1	Tomato	extracellular, nucleus	39.14	32.7
KRG92191	Soybean	nucleus	38.0	32.6
Bra017879.1-P	Field mustard	nucleus	24.0	32.31
Bra010657.1-P	Field mustard	nucleus	23.71	32.17
Bra011833.1-P	Field mustard	nucleus	24.86	31.52
Bra030255.1-P	Field mustard	plastid	20.86	30.93
Bra031371.1-P	Field mustard	nucleus	22.86	30.77
Bra024358.1-P	Field mustard	nucleus	24.0	29.79
Bra031880.1-P	Field mustard	nucleus	22.86	28.88
Bra020490.1-P	Field mustard	mitochondrion	14.0	28.0
Bra027736.1-P	Field mustard	nucleus	23.43	26.89
Bra036536.1-P	Field mustard	mitochondrion	13.71	26.82
Bra024222.1-P	Field mustard	nucleus	17.43	26.75
Bra003659.1-P	Field mustard	nucleus	24.0	26.42
Bra009824.1-P	Field mustard	mitochondrion	14.29	26.04
Bra015634.1-P	Field mustard	nucleus	24.29	25.91
Bra008343.1-P	Field mustard	nucleus	22.86	25.72
Bra008985.1-P	Field mustard	nucleus	13.71	25.67
Bra027697.1-P	Field mustard	nucleus	22.57	25.57
Bra036543.1-P	Field mustard	nucleus	12.86	24.59
Bra040381.1-P	Field mustard	nucleus	22.29	24.3
Bra026140.1-P	Field mustard	nucleus	13.71	24.24
Bra016663.1-P	Field mustard	nucleus	13.71	24.0
Bra010383.1-P	Field mustard	nucleus	18.0	22.83
Bra026280.1-P	Field mustard	nucleus	18.86	22.53
Bra031146.1-P	Field mustard	nucleus	18.57	20.9
Bra009837.1-P	Field mustard	mitochondrion, nucleus	9.14	18.82
Bra026770.1-P	Field mustard	nucleus	8.86	18.13

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra032724	EnsemblPlants:Bra032724.1
EnsemblPlants:Bra032724.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EV91	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF23	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002543DF8	SEG:seg

Description

AT4G13620 (E=9e-125) | AP2 domain-containing transcription factor, putative

Coordinates

chrA04:-:5184647..5185699

Molecular Weight (calculated)

39271.9 Da

IEP (calculated)

9.546

GRAVY (calculated)

-0.549

Length

350 amino acids

Sequence
(BLAST)

001: MEDQFPKLEP RFMHEKLLSS GLYGFLSSST PPQLLGVPII LEGMISPTLS SSQSYMASLN ELTSSIHHQQ SPVASVPWNF LDSFPQSQRP DDIHHPSKPP
101: NLSLFLKEPK LLELSQSNSN MMPYHNYTPN SLHHESDQTR SDQWVDINKA LTNYPSKGFG NYWLSTTKTQ PMKLASGTRT KKVVQTTTPT KLYRGVRQRH
201: WGKWVAEIRL PRNRTRVWLG TFETAEQAAM AYDTAADILR GEYAHLNFPD QKHQLKSGPL RCMIASLLDS KIQQISASSQ VISSGNSPSP SSPKVAGTLE
301: PKNNIKTESG EVVMMKKQKI NKEVMEGDGV QLSRMPSLDI DLIWDALSLP

Best Arabidopsis Sequence Match ( AT4G13620.1 )
(BLAST)

001: MITPIHTQHS LILVYINIYS PPILSKLRTG FILWTNTQKT NKKRNMEDQF PKIETSFMHD KLLSSGIYGF LSSSTPPQLL GVPIFLEGMK SPLLPASSTP
101: SYFVSPHDHE LTSSIHPSPV ASVPWNFLES FPQSQHPDHH PSKPPNLTLF LKEPKLLELS QSESNMSPYH KYIPNSFYQS DQNRNEWVEI NKTLTNYPSK
201: GFGNYWLSTT KTQPMKSKTR KVVQTTTPTK LYRGVRQRHW GKWVAEIRLP RNRTRVWLGT FETAEQAAMA YDTAAYILRG EFAHLNFPDL KHQLKSGSLR
301: CMIASLLESK IQQISSSQVS NSPSPPPPKV GTPEQKNHHM KMESGEDVMM KKQKSHKEVM EGDGVQLSRM PSLDMDLIWD ALSFPHSS

Arabidopsis Description

ERF062Ethylene-responsive transcription factor ERF062 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.