Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY42004 | Canola | nucleus | 94.2 | 98.48 |
Bra017879.1-P | Field mustard | nucleus | 83.33 | 88.46 |
Bra010657.1-P | Field mustard | nucleus | 78.62 | 84.11 |
AT4G39780.1 | Thale cress | nucleus | 81.52 | 82.72 |
Bra030255.1-P | Field mustard | plastid | 52.17 | 61.02 |
Bra024357.1-P | Field mustard | mitochondrion | 23.19 | 52.03 |
Solyc04g054910.2.1 | Tomato | nucleus | 47.46 | 47.12 |
Bra031371.1-P | Field mustard | nucleus | 43.12 | 45.77 |
Bra024358.1-P | Field mustard | nucleus | 46.01 | 45.04 |
KRG97594 | Soybean | nucleus | 50.0 | 44.66 |
Bra031880.1-P | Field mustard | nucleus | 44.57 | 44.4 |
KRH31278 | Soybean | nucleus | 49.64 | 43.08 |
Bra008343.1-P | Field mustard | nucleus | 48.19 | 42.77 |
Bra003659.1-P | Field mustard | nucleus | 47.83 | 41.51 |
Bra015634.1-P | Field mustard | nucleus | 47.1 | 39.63 |
PGSC0003DMT400053152 | Potato | nucleus | 51.45 | 38.38 |
VIT_00s0662g00040.t01 | Wine grape | nucleus | 49.64 | 36.63 |
Bra040381.1-P | Field mustard | nucleus | 37.68 | 32.4 |
Bra036536.1-P | Field mustard | mitochondrion | 19.2 | 29.61 |
Bra020490.1-P | Field mustard | mitochondrion | 18.48 | 29.14 |
Bra009824.1-P | Field mustard | mitochondrion | 19.2 | 27.6 |
Bra026140.1-P | Field mustard | nucleus | 19.57 | 27.27 |
Bra016663.1-P | Field mustard | nucleus | 19.57 | 27.0 |
Bra008985.1-P | Field mustard | nucleus | 17.75 | 26.2 |
Bra024222.1-P | Field mustard | nucleus | 21.38 | 25.88 |
Bra036543.1-P | Field mustard | nucleus | 17.03 | 25.68 |
Bra027697.1-P | Field mustard | nucleus | 28.26 | 25.24 |
Bra032724.1-P | Field mustard | nucleus | 31.52 | 24.86 |
Bra027736.1-P | Field mustard | nucleus | 27.17 | 24.59 |
Bra010383.1-P | Field mustard | nucleus | 24.28 | 24.28 |
Bra026280.1-P | Field mustard | nucleus | 24.64 | 23.21 |
Bra031146.1-P | Field mustard | nucleus | 24.64 | 21.86 |
Bra009837.1-P | Field mustard | mitochondrion, nucleus | 12.68 | 20.59 |
Bra026770.1-P | Field mustard | nucleus | 12.68 | 20.47 |
Protein Annotations
MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlantsGene:Bra011833 | EnsemblPlants:Bra011833.1 |
EnsemblPlants:Bra011833.1-P | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M4D5S6 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002546229 | SEG:seg |
Description
AT4G39780 (E=4e-098) | AP2 domain-containing transcription factor, putative
Coordinates
chrA01:-:315944..316774
Molecular Weight (calculated)
31160.3 Da
IEP (calculated)
4.566
GRAVY (calculated)
-0.601
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIDMFSSS TDHSDPFKEE LMKVLNPLTN SVSSLPPIPN TIFGFNQTAP LGLNQLTPYQ INQIQNQLNQ RRSTNISNLS PKPVPMKNMA VQKLYRGVRQ
101: RHWGKWVAEI RLPKNRTRLW LGTYDTAEEA AMAYDQAAYQ LRGELARLNF PHMRHEYGCG SGDSSFKPLH PSVEAKLEAI CQSLRKTEDD DLPCSETELF
201: PPKAEEYQES EYGFLRADEN SFSDESQVES SSPESGITTT FLDFSDSGFD EIGSFVLEKF PSVEIDWDAI SKLSES
101: RHWGKWVAEI RLPKNRTRLW LGTYDTAEEA AMAYDQAAYQ LRGELARLNF PHMRHEYGCG SGDSSFKPLH PSVEAKLEAI CQSLRKTEDD DLPCSETELF
201: PPKAEEYQES EYGFLRADEN SFSDESQVES SSPESGITTT FLDFSDSGFD EIGSFVLEKF PSVEIDWDAI SKLSES
001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
Arabidopsis Description
ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.