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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42004 Canola nucleus 94.2 98.48
Bra017879.1-P Field mustard nucleus 83.33 88.46
Bra010657.1-P Field mustard nucleus 78.62 84.11
AT4G39780.1 Thale cress nucleus 81.52 82.72
Bra030255.1-P Field mustard plastid 52.17 61.02
Bra024357.1-P Field mustard mitochondrion 23.19 52.03
Solyc04g054910.2.1 Tomato nucleus 47.46 47.12
Bra031371.1-P Field mustard nucleus 43.12 45.77
Bra024358.1-P Field mustard nucleus 46.01 45.04
KRG97594 Soybean nucleus 50.0 44.66
Bra031880.1-P Field mustard nucleus 44.57 44.4
KRH31278 Soybean nucleus 49.64 43.08
Bra008343.1-P Field mustard nucleus 48.19 42.77
Bra003659.1-P Field mustard nucleus 47.83 41.51
Bra015634.1-P Field mustard nucleus 47.1 39.63
PGSC0003DMT400053152 Potato nucleus 51.45 38.38
VIT_00s0662g00040.t01 Wine grape nucleus 49.64 36.63
Bra040381.1-P Field mustard nucleus 37.68 32.4
Bra036536.1-P Field mustard mitochondrion 19.2 29.61
Bra020490.1-P Field mustard mitochondrion 18.48 29.14
Bra009824.1-P Field mustard mitochondrion 19.2 27.6
Bra026140.1-P Field mustard nucleus 19.57 27.27
Bra016663.1-P Field mustard nucleus 19.57 27.0
Bra008985.1-P Field mustard nucleus 17.75 26.2
Bra024222.1-P Field mustard nucleus 21.38 25.88
Bra036543.1-P Field mustard nucleus 17.03 25.68
Bra027697.1-P Field mustard nucleus 28.26 25.24
Bra032724.1-P Field mustard nucleus 31.52 24.86
Bra027736.1-P Field mustard nucleus 27.17 24.59
Bra010383.1-P Field mustard nucleus 24.28 24.28
Bra026280.1-P Field mustard nucleus 24.64 23.21
Bra031146.1-P Field mustard nucleus 24.64 21.86
Bra009837.1-P Field mustard mitochondrion, nucleus 12.68 20.59
Bra026770.1-P Field mustard nucleus 12.68 20.47
Protein Annotations
MapMan:15.5.7.2Gene3D:3.30.730.10InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfEnsemblPlantsGene:Bra011833EnsemblPlants:Bra011833.1
EnsemblPlants:Bra011833.1-PInterPro:DNA-bd_dom_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR001471InterPro:IPR036955UniProt:M4D5S6PFAM:PF00847PRINTS:PR00367PFscan:PS51032
PANTHER:PTHR31657PANTHER:PTHR31657:SF9SMART:SM00380SUPFAM:SSF54171UniParc:UPI0002546229SEG:seg
Description
AT4G39780 (E=4e-098) | AP2 domain-containing transcription factor, putative
Coordinates
chrA01:-:315944..316774
Molecular Weight (calculated)
31160.3 Da
IEP (calculated)
4.566
GRAVY (calculated)
-0.601
Length
276 amino acids
Sequence
(BLAST)
001: MAAIDMFSSS TDHSDPFKEE LMKVLNPLTN SVSSLPPIPN TIFGFNQTAP LGLNQLTPYQ INQIQNQLNQ RRSTNISNLS PKPVPMKNMA VQKLYRGVRQ
101: RHWGKWVAEI RLPKNRTRLW LGTYDTAEEA AMAYDQAAYQ LRGELARLNF PHMRHEYGCG SGDSSFKPLH PSVEAKLEAI CQSLRKTEDD DLPCSETELF
201: PPKAEEYQES EYGFLRADEN SFSDESQVES SSPESGITTT FLDFSDSGFD EIGSFVLEKF PSVEIDWDAI SKLSES
Best Arabidopsis Sequence Match ( AT4G39780.1 )
(BLAST)
001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
Arabidopsis Description
ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.