Factsheet for Bra008985.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69779	Canola	nucleus	100.0	100.0
CDY68539	Canola	mitochondrion, nucleus	96.79	97.31
AT5G11190.1	Thale cress	mitochondrion, nucleus	89.84	88.89
Solyc06g053240.2.1	Tomato	nucleus	13.9	83.87
Bra036543.1-P	Field mustard	nucleus	62.57	63.93
VIT_04s0008g05440.t01	Wine grape	nucleus	63.1	60.82
Bra009837.1-P	Field mustard	mitochondrion, nucleus	50.27	55.29
KRH05157	Soybean	nucleus	56.68	53.27
Bra026140.1-P	Field mustard	nucleus	55.62	52.53
Bra016663.1-P	Field mustard	nucleus	55.08	51.5
Bra026770.1-P	Field mustard	nucleus	45.99	50.29
PGSC0003DMT400077702	Potato	nucleus	54.01	50.0
Bra020490.1-P	Field mustard	mitochondrion	36.9	39.43
Bra036536.1-P	Field mustard	mitochondrion	36.9	38.55
Bra009824.1-P	Field mustard	mitochondrion	36.9	35.94
Bra024357.1-P	Field mustard	mitochondrion	21.93	33.33
Bra030255.1-P	Field mustard	plastid	26.74	21.19
Bra031371.1-P	Field mustard	nucleus	26.2	18.85
Bra017879.1-P	Field mustard	nucleus	25.67	18.46
Bra031880.1-P	Field mustard	nucleus	27.27	18.41
Bra010657.1-P	Field mustard	nucleus	25.13	18.22
Bra011833.1-P	Field mustard	nucleus	26.2	17.75
Bra024222.1-P	Field mustard	nucleus	21.39	17.54
Bra024358.1-P	Field mustard	nucleus	26.2	17.38
Bra027697.1-P	Field mustard	nucleus	27.81	16.83
Bra003659.1-P	Field mustard	nucleus	28.34	16.67
Bra027736.1-P	Field mustard	nucleus	26.74	16.39
Bra008343.1-P	Field mustard	nucleus	26.74	16.08
Bra015634.1-P	Field mustard	nucleus	27.81	15.85
Bra010383.1-P	Field mustard	nucleus	21.93	14.86
Bra040381.1-P	Field mustard	nucleus	25.13	14.64
Bra026280.1-P	Field mustard	nucleus	22.46	14.33
Bra032724.1-P	Field mustard	nucleus	25.67	13.71
Bra031146.1-P	Field mustard	nucleus	21.93	13.18

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlantsGene:Bra008985	EnsemblPlants:Bra008985.1	EnsemblPlants:Bra008985.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CXN8	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF13	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002544302	SEG:seg	:	:	:

Description

AT5G11190 (E=2e-072) SHN3 | SHN3 (shine3); DNA binding / transcription factor

Coordinates

chrA10:-:14728132..14729060

Molecular Weight (calculated)

21233.1 Da

IEP (calculated)

6.364

GRAVY (calculated)

-0.705

Length

187 amino acids

Sequence
(BLAST)

001: MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT NFPVVKSEQQ GSDNDHDPNS PLMSTKSLSE LLNAKLRKSC
101: KDLTPSLTCL RLDTDSSHIG VWQKRAGSKT SPNWVMRLEL GNVVNESAHE LGMKKQDVEK AEDVEEEANV DEDQLAMEMI EELLNWS

Best Arabidopsis Sequence Match ( AT5G11190.1 )
(BLAST)

001: MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT NFPVVKSEEG SDHVKDVNSP LMSPKSLSEL LNAKLRKSCK
101: DLTPSLTCLR LDTDSSHIGV WQKRAGSKTS PTWVMRLELG NVVNESAVDL GLTTMNKQNV EKEEEEEEAI ISDEDQLAME MIEELLNWS

Arabidopsis Description

SHN2Ethylene-responsive transcription factor SHINE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN7]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.