Factsheet for Bra036543.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19805	Canola	nucleus	98.36	97.83
Solyc06g053240.2.1	Tomato	nucleus	14.75	87.1
AT5G25390.2	Thale cress	nucleus	81.97	79.37
Bra009837.1-P	Field mustard	mitochondrion, nucleus	71.58	77.06
Bra008985.1-P	Field mustard	nucleus	63.93	62.57
VIT_04s0008g05440.t01	Wine grape	nucleus	60.66	57.22
KRH05157	Soybean	nucleus	58.47	53.77
Bra026140.1-P	Field mustard	nucleus	55.19	51.01
PGSC0003DMT400077702	Potato	nucleus	56.28	50.99
Bra016663.1-P	Field mustard	nucleus	55.19	50.5
Bra026770.1-P	Field mustard	nucleus	44.81	47.95
Bra020490.1-P	Field mustard	mitochondrion	37.16	38.86
Bra036536.1-P	Field mustard	mitochondrion	37.16	37.99
Bra009824.1-P	Field mustard	mitochondrion	37.7	35.94
Bra024357.1-P	Field mustard	mitochondrion	21.86	32.52
Bra030255.1-P	Field mustard	plastid	26.23	20.34
Bra031371.1-P	Field mustard	nucleus	26.78	18.85
Bra031880.1-P	Field mustard	nucleus	27.32	18.05
Bra010657.1-P	Field mustard	nucleus	25.14	17.83
Bra024358.1-P	Field mustard	nucleus	27.32	17.73
Bra017879.1-P	Field mustard	nucleus	25.14	17.69
Bra024222.1-P	Field mustard	nucleus	21.31	17.11
Bra011833.1-P	Field mustard	nucleus	25.68	17.03
Bra027697.1-P	Field mustard	nucleus	27.32	16.18
Bra008343.1-P	Field mustard	nucleus	27.32	16.08
Bra027736.1-P	Field mustard	nucleus	26.78	16.07
Bra003659.1-P	Field mustard	nucleus	27.87	16.04
Bra015634.1-P	Field mustard	nucleus	27.87	15.55
Bra040381.1-P	Field mustard	nucleus	26.78	15.26
Bra010383.1-P	Field mustard	nucleus	22.4	14.86
Bra026280.1-P	Field mustard	nucleus	22.4	13.99
Bra031146.1-P	Field mustard	nucleus	21.86	12.86
Bra032724.1-P	Field mustard	nucleus	24.59	12.86

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlantsGene:Bra036543	EnsemblPlants:Bra036543.1	EnsemblPlants:Bra036543.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4F634	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF13	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002541C8A	:	:	:	:

Description

AT5G25390 (E=3e-082) SHN2 | SHN2 (shine2); DNA binding / transcription factor

Coordinates

chrA09:+:1676660..1678029

Molecular Weight (calculated)

20279.0 Da

IEP (calculated)

9.262

GRAVY (calculated)

-0.573

Length

183 amino acids

Sequence
(BLAST)

001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFNTAE EAARVYDQAA VLMNGQNAKT NFPVIKSNGS VSPDVNTPLS ELLNAKLRKN CKDQTPYLTC
101: LRLDNNSSHI GVWQKRAGSS SSQNWVKLVE LGDGVSASAG DTGTNKLKKG NDDVEEEDQM SMQMIEELLN WTCPASASVS GLS

Best Arabidopsis Sequence Match ( AT5G25390.2 )
(BLAST)

001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV

Arabidopsis Description

SHN3SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.