Factsheet for Bra024222.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29884	Canola	nucleus	100.0	87.36
Bra010383.1-P	Field mustard	nucleus	76.32	63.04
Bra026280.1-P	Field mustard	nucleus	79.82	62.12
AT4G28140.1	Thale cress	nucleus	76.32	59.59
Bra024357.1-P	Field mustard	mitochondrion	22.37	41.46
Bra031146.1-P	Field mustard	nucleus	50.0	36.66
Solyc07g054220.1.1	Tomato	nucleus	48.68	28.46
PGSC0003DMT400047265	Potato	nucleus	47.81	28.02
Bra030255.1-P	Field mustard	plastid	26.75	25.85
KRH26929	Soybean	nucleus	44.74	24.17
VIT_12s0059g00280.t01	Wine grape	nucleus	49.12	24.09
KRH22409	Soybean	nucleus	43.86	23.87
Os04t0529100-01	Rice	nucleus	38.6	23.34
Bra017879.1-P	Field mustard	nucleus	26.32	23.08
Bra010657.1-P	Field mustard	nucleus	25.88	22.87
Zm00001d025910_P001	Maize	nucleus	40.35	22.77
Bra020490.1-P	Field mustard	mitochondrion	17.11	22.29
KRH25541	Soybean	nucleus	39.47	22.11
Bra031371.1-P	Field mustard	nucleus	25.0	21.92
KRH55997	Soybean	nucleus	38.6	21.84
Zm00001d017366_P001	Maize	nucleus	42.98	21.83
Bra036536.1-P	Field mustard	mitochondrion	17.11	21.79
Bra026140.1-P	Field mustard	nucleus	18.86	21.72
VIT_19s0014g03180.t01	Wine grape	nucleus	38.16	21.59
Zm00001d051239_P001	Maize	nucleus	42.11	21.57
GSMUA_Achr4P26080_001	Banana	nucleus	38.16	21.43
Bra008985.1-P	Field mustard	nucleus	17.54	21.39
Bra011833.1-P	Field mustard	nucleus	25.88	21.38
Bra036543.1-P	Field mustard	nucleus	17.11	21.31
Zm00001d002867_P001	Maize	nucleus	41.67	21.02
Bra016663.1-P	Field mustard	nucleus	18.42	21.0
TraesCS6D01G217800.1	Wheat	nucleus	41.67	20.79
TraesCS6B01G263800.1	Wheat	nucleus	40.79	20.48
Bra009824.1-P	Field mustard	mitochondrion	17.11	20.31
OQU85375	Sorghum	nucleus	41.67	20.3
Os02t0638650-01	Rice	nucleus	42.11	20.3
TraesCS2A01G373700.1	Wheat	nucleus	39.91	20.04
TraesCS6A01G235100.1	Wheat	nucleus	40.35	19.96
KXG26694	Sorghum	nucleus	40.35	19.91
TraesCS2B01G390800.1	Wheat	nucleus	39.47	19.82
Bra003659.1-P	Field mustard	nucleus	27.63	19.81
Bra024358.1-P	Field mustard	nucleus	24.12	19.5
TraesCS2D01G369900.1	Wheat	nucleus	38.6	19.34
Bra040381.1-P	Field mustard	nucleus	27.19	19.31
Bra031880.1-P	Field mustard	nucleus	23.25	19.13
Bra008343.1-P	Field mustard	nucleus	25.88	18.97
Bra015634.1-P	Field mustard	nucleus	25.44	17.68
Bra032724.1-P	Field mustard	nucleus	26.75	17.43
Bra027736.1-P	Field mustard	nucleus	22.81	17.05
HORVU6Hr1G060140.1	Barley	nucleus, plastid	41.23	17.0
Bra026770.1-P	Field mustard	nucleus	12.72	16.96
Bra027697.1-P	Field mustard	nucleus	21.93	16.18
Bra009837.1-P	Field mustard	mitochondrion, nucleus	11.84	15.88

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra024222	EnsemblPlants:Bra024222.1
EnsemblPlants:Bra024222.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4E618	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF19	SMART:SM00380	SUPFAM:SSF54171	SUPFAM:SSF81995	UniParc:UPI0002540BB3
SEG:seg	:	:	:	:	:

Description

AT4G28140 (E=4e-078) | AP2 domain-containing transcription factor, putative

Coordinates

chrA03:-:26816053..26816739

Molecular Weight (calculated)

26108.0 Da

IEP (calculated)

4.711

GRAVY (calculated)

-0.881

Length

228 amino acids

Sequence
(BLAST)

001: MRDTDHRPKP YFPFTLDPTI QNQQQQHFGY VQQHDQTMQG QNQVISFSPQ QPQQQYWSGT LNLSQESVQP YSATKLYRGV RQRQWGKWVA EIRKPRSRAR
101: LWLGTFDTAE EAAMAYDRQA FILRGHSATL NFPEHYVNKE IEPLDETDAS SSLDQKQSEA PQPYEVNLES KEEAVSDGVV EDGMAEAWLN AVTAGWGPES
201: PLWDDLDSSH FPQCSSTSSA SCPMRPYF

Best Arabidopsis Sequence Match ( AT4G28140.1 )
(BLAST)

001: MDFDEELNLC ITKGKNVDHS FGGEASSTSP RSMKKMKSPS RPKPYFQSSS SPYSLEAFPF SLDPTLQNQQ QQLGSYVPVL EQRQDPTMQG QKQMISFSPQ
101: QQQQQQQYMA QYWSDTLNLS PRGRMMMMMS QEAVQPYIAT KLYRGVRQRQ WGKWVAEIRK PRSRARLWLG TFDTAEEAAM AYDRQAFKLR GHSATLNFPE
201: HFVNKESELH DSNSSDQKEP ETPQPSEVNL ESKELPVIDV GREEGMAEAW YNAITSGWGP ESPLWDDLDS SHQFSSESSS SSPLSCPMRP FF

Arabidopsis Description

ERF054Ethylene-responsive transcription factor ERF054 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.