Factsheet for VIT_12s0059g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	6.24	65.91
PGSC0003DMT400047265	Potato	nucleus	47.31	56.56
Solyc07g054220.1.1	Tomato	nucleus	46.45	55.38
KRH55997	Soybean	nucleus	46.67	53.85
KRH25541	Soybean	nucleus	46.88	53.56
KRH22409	Soybean	nucleus	47.96	53.22
KRH26929	Soybean	nucleus	47.53	52.37
Bra024222.1-P	Field mustard	nucleus	24.09	49.12
Bra026280.1-P	Field mustard	nucleus	30.54	48.46
CDY19002	Canola	nucleus	30.54	48.46
AT4G28140.1	Thale cress	nucleus	30.32	48.29
CDX89202	Canola	nucleus	30.32	48.12
CDX97423	Canola	nucleus	28.82	48.03
CDY58717	Canola	nucleus	26.88	47.89
Bra010383.1-P	Field mustard	nucleus	28.39	47.83
CDY29884	Canola	nucleus	26.67	47.51
CDY14255	Canola	nucleus	27.96	47.1
AT2G20880.1	Thale cress	nucleus	33.33	46.13
CDX81987	Canola	nucleus	30.75	45.69
Bra031146.1-P	Field mustard	nucleus	30.11	45.02
CDY69209	Canola	nucleus	30.11	45.02
GSMUA_Achr4P26080_001	Banana	nucleus	37.2	42.61
Zm00001d025910_P001	Maize	nucleus	33.76	38.86
Os04t0529100-01	Rice	nucleus	31.18	38.46
Zm00001d017366_P001	Maize	nucleus	36.99	38.31
Os02t0638650-01	Rice	nucleus	38.71	38.05
TraesCS2A01G373700.1	Wheat	nucleus	36.99	37.89
TraesCS6B01G263800.1	Wheat	nucleus	36.77	37.67
OQU85375	Sorghum	nucleus	37.85	37.61
TraesCS2D01G369900.1	Wheat	nucleus	36.77	37.58
TraesCS2B01G390800.1	Wheat	nucleus	36.56	37.44
TraesCS6D01G217800.1	Wheat	nucleus	36.77	37.42
Zm00001d002867_P001	Maize	nucleus	36.34	37.39
Zm00001d051239_P001	Maize	nucleus	35.48	37.08
KXG26694	Sorghum	nucleus	36.56	36.8
TraesCS6A01G235100.1	Wheat	nucleus	35.91	36.23
VIT_00s0662g00030.t01	Wine grape	nucleus	17.63	35.81
VIT_19s0014g03180.t01	Wine grape	nucleus	30.75	35.48
VIT_04s0008g06000.t01	Wine grape	mitochondrion	12.69	31.55
HORVU6Hr1G060140.1	Barley	nucleus, plastid	36.99	31.1
VIT_07s0031g00420.t01	Wine grape	nucleus	6.24	30.21
VIT_09s0002g09120.t01	Wine grape	nucleus	11.18	29.71
VIT_09s0002g09140.t01	Wine grape	nucleus	11.18	29.38
VIT_02s0025g01360.t01	Wine grape	nucleus	15.48	27.27
VIT_00s0662g00040.t01	Wine grape	nucleus	21.94	27.27
VIT_09s0002g06750.t01	Wine grape	mitochondrion	10.75	27.03
VIT_18s0001g05250.t01	Wine grape	nucleus	21.29	26.98
VIT_11s0016g05340.t01	Wine grape	nucleus	10.54	24.02
VIT_04s0008g05440.t01	Wine grape	nucleus	9.03	21.65
VIT_05s0029g00140.t01	Wine grape	nucleus	17.63	20.3

Protein Annotations

EntrezGene:100246593	wikigene:100246593	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB51939	ProteinID:CCB51939.1	InterPro:DNA-bd_dom_sf	UniProt:F6HI93	EMBL:FN595765	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100246593
wikigene:LOC100246593	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF19
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001984475	ArrayExpress:VIT_12s0059g00280	EnsemblPlantsGene:VIT_12s0059g00280	EnsemblPlants:VIT_12s0059g00280.t01
RefSeq:XP_002267468	RefSeq:XP_002267468.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:5139472..5141309

Molecular Weight (calculated)

51562.7 Da

IEP (calculated)

6.643

GRAVY (calculated)

-0.825

Length

465 amino acids

Sequence
(BLAST)

001: MDAAKDGGKS KKSVGETRDM VGRERSKAGD FDLSLERRQW KPVFGEASMS NRPLKKIRSP ERRDSSLSSS SSSLAYQPPS PSLPSTVSAS SAACLNLPPS
101: SRIVFPFAFD GSQQMEIPQQ FRTAPLAMFP PPPMQRTSQN QQQMISFAPQ HHHSMASYPA FLAGDSGLQQ QQQQQLLQYW SDALNLSPRG RMMMMNRLNQ
201: DGRNFFRPQA PPISTTKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEDAALAYDR EAFKLRGENA RLNFPELFLN KDKAGSTAPS SSSSSPPTPH
301: ENSLWGRSQN QPQQAPEGLN LQDSEVGMLP PPAPSPGYDS NNELGLVLGS SEAAARNDEV QKSSNAGESV SESPPESVWG EMAEAWFNAI PAGWGPGSAV
401: WDDLDTSNNL LLQSNVHFGN AHQQQQQQAF NDPDYGRQQD NLDSASSSSS SCPMRPFFWR DQDQD

Best Arabidopsis Sequence Match ( AT2G20880.1 )
(BLAST)

001: MATAKNKGKS IRVLGTSEAE KKDEMELEEE FQFSSGKYKD SGPGSDMWLG DASSTSPRSL RKTRTFDRHN PYLVSSYATP QPPTTTTCSV SFPFYLPPAI
101: QNQQRFLHPN DPSGQRQQQM ISFDPQQQVQ PYVAQQQQQQ QHLLQYWRDI LKLSPSGRMM MMNMLRQESD LPLTRPPVQP FSATKLYRGV RQRHWGKWVA
201: EIRKPRNRTR LWLGTFDTAE EAAMAYDREA FKLRGETARL NFPELFLNKQ EPTPVHQKQC ETGTTSEDSS RRGEDDSSTA LAVGGVSEET GWAEAWFNAI
301: PEEWGPGSPL WDDYHFPISN HKDDLDATQN SSSDTI

Arabidopsis Description

ERF053Ethylene-responsive transcription factor ERF053 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.